CSC621-Earth-Project

Install

pip install SimpleITK
clone https://github.com/WilliamLewww/CSC621-Earth-Project.git

Download version of Fiji from: https://fiji.sc/ Extract Fiji to root of project directory

python tests/HelloWorld.py

Usage

Run registration:

python registration/main.py

Run segmentation:

python segmentation/main.py

Folder Structure

• data: Contains all the data to be used for registration and segmentation

• Fiji.app: Fiji application directory

• registration: Project files for registration

• segmentation: Project files for segmentation

• tests: Files to test Fiji and SimpleITK