Leveraging Metabolic Modeling and Machine Learning to Uncover Modulators of Quiescence Depth

Description

This repository contains code used to generate results associated with the following manuscript:

Eames, A., & Chandrasekaran, S. (2024). Leveraging metabolic modeling and machine learning to uncover modulators of quiescence depth. PNAS Nexus, pgae013. https://doi.org/10.1093/pnasnexus/pgae013

Dependencies

MATLAB (developed with version R2022A and R2022B)

Gurobi (developed with version 9.0 MacOS and version 9.5 Linux)

COBRA Toolbox (developed with v3.0)

R (developed with version 4.3.0)

Installation

To download a local version of this repository, use the following command:

git clone https://github.com/sriram-lab/quiescence-depth-modulation.git