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To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.

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sriramsrikant/OD_growth_finder

 
 

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Forked by Sriram Srikant, from the original repository of www.github.com/nwespe. Changelog will be reported in commits and changes of consequence will be reproduced below.

[20200607] Added repository to both WSL Ubuntu 18.04 and Windows 10 on SriXPS15.


From original README.md:

The python program growth_curve_analysis.py was written in collaboration with Bryan Weinstein, with input from Yu-Ying Phoebe Hsieh and Marco Fumasoni, to analyse OD measurements over time. For a full description of the script, see the Growth Curve Analysis PDF. The program can determine multiple parameters, including maximum growth rate, lag time and saturation time, as well as an 'effective' growth rate for any defined period of time in the dataset. See the Pop-GROC demonstration Jupyter notebook for examples of using the growth_curve_analysis.py program, and see the Plot-GROC demonstration notebook for plotting results from this program and for plotting the averages of raw data from multiple experiments.

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To help out the Laub labs. Finds growth rates from OD vs. time measurements on a plate reader.

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