PyMOL-RR is a PyMOL plugin that can be used for visualizing residue-residue contact predictions in the format required by the CASP experiment in PyMOL. You can filter predictions using a GUI and map them onto a provided PDB structure.
The plugin takes a contact prediction in CASP RR format and maps the highest-scoring predictions onto a protein structure.
For easier installation, I recommend PyMOL >= 1.5.0.6 . Older versions will not have the plugin manager described in the installation procedure.
Checkout the project somewhere on your hard disk. In PyMOL, go to Plugin -> Plugin Manager -> Settings and ensure that the root of the PyMOL-RR git repository (NOT THE casprr SUBDIRECTORY!) is in the plugin search path.
I recommend also installing the ZeroResidues script from the PyMOLWiki to renumber residues so they are starting from index 0.
PyMOL-RR is licensed under the MIT License.
Copyright (c) 2012 Stefan Seemayer
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
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