Supplementary material for the manuscript "Interpretable generative deep learning: an illustration with single cell gene expression data"

Here you can recaptiulate the application of LDVAE and log-linear models to single-cell RNA-Seq data as shown in the manuscript. In LDVAE_analysis.ipynb you find the application of LDVAE. In LogLinearModels.ipynb you find the application of the log-linear modeling approach. Before using LogLinearModels.ipynb you first have to run the notebook PBMCscVI.ipynb for generating the synthetic observations.