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Json schema phenotype boolean to str #8

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merged 8 commits into from
Mar 23, 2021
Merged

Json schema phenotype boolean to str #8

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9d692c4
changed resistance phenotype from bool to str
Mar 22, 2021
4d7ab10
removed duration in setup.cfg causing pytest error, removed mkdir lin…
Mar 23, 2021
4a9d626
Bump version: 2.1.9 → 2.1.9
Mar 23, 2021
e5f43d6
Bump version: 2.1.9 → 2.1.9
Mar 23, 2021
aa6d44f
Bump version: 2.1.9 → 2.1.10
Mar 23, 2021
d165f54
fixing version string screwup
Mar 23, 2021
391814f
updated HISTORY.md
Mar 23, 2021
9e95ff9
Update HISTORY.md
PovilasMat Mar 23, 2021
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2 changes: 0 additions & 2 deletions .github/workflows/run_tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,8 +24,6 @@ jobs:
docker build --build-arg BUILD_ENV=test -t ${{ github.event.repository.name }} .
- name: Get_tests_data
run: >
mkdir -p /bifrost/;
cd /bifrost/;
git clone https://github.com/ssi-dk/bifrost_test_data.git;
cd bifrost_test_data/samples;
bash download_S1.sh
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2 changes: 1 addition & 1 deletion bifrostlib/__init__.py
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Expand Up @@ -4,5 +4,5 @@
'database_interface'
]

__version__ = '2.1.9'
__version__ = '2.1.10'

2 changes: 1 addition & 1 deletion bifrostlib/schemas/bifrost.jsonc
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Expand Up @@ -814,7 +814,7 @@
"type": "string"
},
"phenotype": {
"type": "boolean"
"type": "string"
},
"point_mutations": {
"type": "object"
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4 changes: 2 additions & 2 deletions setup.cfg
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@@ -1,5 +1,5 @@
[bumpversion]
current_version = 2.1.9
current_version = 2.1.10
commit = True
tag = True

Expand All @@ -16,6 +16,6 @@ replace = __version__ = '{new_version}'

[tool:pytest]
minversion = 6.0
addopts = -ra -q --durations=0
addopts = -ra -q
testpaths =
tests
2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -2,7 +2,7 @@

setup(
name='bifrostlib',
version='2.1.9',
version='2.1.10',
description='Datahandling functions for bifrost (later to be API interface)',
url='https://github.com/ssi-dk/bifrostlib',
author="Kim Ng, Martin Basterrechea",
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