To use this code, open the file Capillary_graphing.mlx and follow the instructions. This live script is for processing of data. To produce figures like the ones in the manuscript, run Make_Figures.mlx. Example datasets are included: micro.mat and intensity_example.mat. These must be unzipped first. The dataset micro.mat is a cropped version of the angiogram in the manuscript (the original was too large to include without cropping).
Contact sabina_stefan@brown.edu with any questions.
Please cite: Stefan, Sabina, and Jonghwan Lee. "Deep learning toolbox for automated enhancement, segmentation, and graphing of cortical optical coherence tomography microangiograms." Biomedical Optics Express 11.12 (2020): 7325-7342.