Fixed bug where metrics files would not be found if a relative path w…

…as used as output dir

bin/illumina2bam_demultiplex_wrapper

@@ -575,7 +575,8 @@ function copyFilesAndDirs(list, fromDir, toDir, log) {
 		if (name.indexOf("[temp]") > -1) {
 			fromPath = path.normalize(name.replace("[temp]", argv.tempDirectory));
 		} else {
-			fromPath = path.normalize(fromDir + "/" + name);
+			fromDir = (fromDir === "") ? "" : fromDir + "/";
+			fromPath = path.normalize(fromDir + name);
 		}
 		var toPath = path.normalize(toDir + "/" + list[name]);
 		if (path.existsSync(fromPath)) {

lib/initSettings.js

@@ -17,9 +17,9 @@ var jarsDirectory = {
 	},
 	locate: function() {
 		var self = this;
-		var rootPath = path.normalize("./../");
+		var rootPath = path.normalize("./../../");
 		var foundDir = self.checkDirectory(rootPath);
-		return foundDir;
+		return path.resolve(foundDir);
 	},
 	checkDirectory: function(dirPath) {
 		var self = this;

package.json

@@ -1,6 +1,6 @@
 {
     "name" : "illumina2bam-tools",
-    "version" : "0.1.0",
+    "version" : "0.1.2",
     "description" : "Tools for working with the illumina2bam fork located at https://github.com/staliv/illumina2bam. The fork is modified for the Lund oncology research department workflow.",
     "main" : "./index.js",
     "dependencies" : {
@@ -27,4 +27,4 @@
     "engine" : {
         "node" : ">=0.6.8"
     }
-}
+}