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Feature/0712 model base class #713

Merged
merged 38 commits into from Jul 18, 2019
Merged

Feature/0712 model base class #713

merged 38 commits into from Jul 18, 2019

Commits on Jul 5, 2019

  1. template constructor to base model

    Bob Carpenter committed Jul 5, 2019
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Commits on Jul 6, 2019

  1. Merge branch 'develop' of https://github.com/stan-dev/cmdstan into fe… 

    …ature/0712-model-base-class
    Bob Carpenter committed Jul 6, 2019
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  2. remove unused template parameter in command

    Bob Carpenter committed Jul 6, 2019
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  3. update includes for command

    Bob Carpenter committed Jul 6, 2019
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Commits on Jul 8, 2019

  1. include model_base

    @mitzimorris
    mitzimorris committed Jul 8, 2019
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  2. updated makefile rules

    @mitzimorris
    mitzimorris committed Jul 8, 2019
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  3. checkpointing makefile

    @mitzimorris
    mitzimorris committed Jul 8, 2019
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  4. Merge branch 'feature/0712-model-base-class' of https://github.com/st… 

    …an-dev/cmdstan into feature/0712-model-base-class
    Bob Carpenter committed Jul 8, 2019
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  5. remove spurious blank line

    @mitzimorris
    mitzimorris committed Jul 8, 2019
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  6. change link to compile; same definition

    @mitzimorris
    mitzimorris committed Jul 8, 2019
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Commits on Jul 9, 2019

  1. model headers at compile, not link

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  2. cannot make manual on circle ci - docs not in bookdown

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  3. revert to develop version of submodule stan

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  4. Merge branch 'feature/0712-model-base-class' of https://github.com/st… 

    …an-dev/cmdstan into feature/0712-model-base-class
    Bob Carpenter committed Jul 9, 2019
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  5. use makefile variable for precompiled headers

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  6. Merge branch 'feature/0712-model-base-class' of https://github.com/st… 

    …an-dev/cmdstan into feature/0712-model-base-class
    Bob Carpenter committed Jul 9, 2019
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  7. remove .d generation to make executable

    Bob Carpenter committed Jul 9, 2019
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  8. Merge branch 'develop' of https://github.com/stan-dev/cmdstan into fe… 

    …ature/0712-model-base-class
    Bob Carpenter committed Jul 9, 2019
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  9. Merge branch 'feature/0712-model-base-class' of https://github.com/st… 

    …an-dev/cmdstan into feature/0712-model-base-class
    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  10. makefile removes main.o as part of clean-all

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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  11. make/program better readiblity; cleans out .cpp and .o files

    @mitzimorris
    mitzimorris committed Jul 9, 2019
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Commits on Jul 14, 2019

  1. use pathsubst for CMDSTAN_MAIN_O

    @mitzimorris
    mitzimorris committed Jul 14, 2019
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  2. Merge branch 'develop' of https://github.com/stan-dev/cmdstan into fe… 

    …ature/0712-model-base-class
    @mitzimorris
    mitzimorris committed Jul 14, 2019
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Commits on Jul 15, 2019

  1. changes per code review comments

    @mitzimorris
    mitzimorris committed Jul 15, 2019
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  2. fixed unit tests

    @mitzimorris
    mitzimorris committed Jul 15, 2019
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Commits on Jul 16, 2019

  1. tweaked makefiles, deps generated only for unit tests, not models

    @mitzimorris
    mitzimorris committed Jul 16, 2019
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  2. use var CMDSTAN_MAIN_O everywhere

    @mitzimorris
    mitzimorris committed Jul 16, 2019
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Commits on Jul 17, 2019

  1. makefile cleanup per code review request

    @mitzimorris
    mitzimorris committed Jul 17, 2019
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  2. makefile - task compile_info

    @mitzimorris
    mitzimorris committed Jul 17, 2019
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  3. need mpi header

    @mitzimorris
    mitzimorris committed Jul 17, 2019
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  4. another attempt at mpi headers

    @mitzimorris
    mitzimorris committed Jul 17, 2019
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Commits on Jul 18, 2019

  1. probably not a fix

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  2. Merge branch 'develop' of https://github.com/stan-dev/cmdstan into fe… 

    …ature/0712-model-base-class
    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  3. fix comment, try different link order

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  4. fix mpi test

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  5. add back in test for manual

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  6. simplify test for manual

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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  7. makefile comment

    @mitzimorris
    mitzimorris committed Jul 18, 2019
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