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Add rebuild_cmdstan to API doc #1026

Add rebuild_cmdstan to API doc

Add rebuild_cmdstan to API doc #1026

Workflow file for this run

name: CmdStanPy
on:
push:
branches:
- 'develop'
- 'master'
tags:
- '**'
pull_request:
workflow_dispatch:
inputs:
cmdstan-version:
description: 'Version to test'
required: false
default: ''
# only run one copy per PR
concurrency:
group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
cancel-in-progress: true
jobs:
get-cmdstan-version:
# get the latest cmdstan version to use as part of the cache key
name: grab version
runs-on: ubuntu-latest
steps:
- name: Get CmdStan version
id: check-cmdstan
run: |
if [[ "${{ github.event.inputs.cmdstan-version }}" != "" ]]; then
echo "version=${{ github.event.inputs.cmdstan-version }}" >> $GITHUB_OUTPUT
else
python -c 'import requests;print("version="+requests.get("https://api.github.com/repos/stan-dev/cmdstan/releases/latest").json()["tag_name"][1:])' >> $GITHUB_OUTPUT
fi
outputs:
version: ${{ steps.check-cmdstan.outputs.version }}
cmdstanpy:
needs: get-cmdstan-version
name: tests
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, macos-latest, windows-latest]
python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
steps:
- name: Check out github
uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: python -m pip install --upgrade pip wheel build
- name: Build package
run: |
python -m build
python -m pip install .[test]
- name: Show libraries
run: python -m pip freeze
- name: Run flake8, pylint, mypy
if: matrix.python-version == '3.11'
run: |
flake8 cmdstanpy test
pylint -v cmdstanpy test
mypy cmdstanpy
- name: CmdStan installation cacheing
id: cache-cmdstan
if: ${{ !startswith(needs.get-cmdstan-version.outputs.version, 'git:') }}
uses: actions/cache@v4
with:
path: ~/.cmdstan
key: ${{ runner.os }}-cmdstan-${{ needs.get-cmdstan-version.outputs.version }}-${{ hashFiles('**/install_cmdstan.py') }}
- name: Delete precompiled header (MacOS)
if: matrix.os == 'macos-latest' && steps.cache-cmdstan.outputs.cache-hit == 'true'
run: rm -rf ~/.cmdstan/cmdstan-${{ needs.get-cmdstan-version.outputs.version }}/stan/src/stan/model/*.hpp.gch
- name: Install CmdStan (Linux, macOS)
if: matrix.os != 'windows-latest'
run: |
install_cmdstan -h
install_cxx_toolchain -h
python -c "import cmdstanpy; cmdstanpy.install_cmdstan(version='${{ needs.get-cmdstan-version.outputs.version }}', cores=4)"
- name: Install CmdStan (Windows)
if: matrix.os == 'windows-latest'
run: |
install_cmdstan -h
install_cxx_toolchain -h
python -m cmdstanpy.install_cmdstan --version ${{ needs.get-cmdstan-version.outputs.version }} --cores 4
- name: Run tests
run: |
mkdir run_tests
cd run_tests
pytest -v ../test --cov=../cmdstanpy
- name: Submit codecov
run: |
pip install codecov
cd run_tests
codecov