s/pycmdstan/cmdstanpy/g

.gitlab-ci.yml

@@ -5,7 +5,7 @@ test:
   image: $registry/$tag
   script:
     - ls
-    - pytest --cov=pycmdstan --cov-report=term --cov-report=html -n 2 pycmdstan/tests.py
+    - pytest --cov=cmdstanpy --cov-report=term --cov-report=html -n 2 cmdstanpy/tests.py
   artifacts:
     paths:
     - htmlcov/

.travis.yml

@@ -6,4 +6,4 @@ install:
   - docker build -t cmdstanpy .
 
 script:
-  - docker run --rm cmdstanpy pytest --cov=pycmdstan --cov-report=term --cov-report=html -n 10 pycmdstan/tests.py
+  - docker run --rm cmdstanpy pytest --cov=cmdstanpy --cov-report=term --cov-report=html -n 10 cmdstanpy/tests.py

Dockerfile

@@ -3,7 +3,6 @@ FROM python:3.6-stretch
 ENV CSVER=2.17.1
 ENV CMDSTAN=/opt/cmdstan-$CSVER
 ENV CXX=clang++-3.9
-ENV MPLBACKEND=agg
 ENV PYTHONDONTWRITEBYTECODE=1
 
 RUN apt-get update && apt-get install -y clang-3.9
@@ -17,7 +16,6 @@ RUN curl -OL https://github.com/stan-dev/cmdstan/releases/download/v$CSVER/cmdst
  && cd cmdstan-$CSVER \
  && make -j2 build examples/bernoulli/bernoulli
 
-RUN mkdir -p /opt/pycmdstan
-WORKDIR /opt/pycmdstan
-RUN pip install scipy
-ADD ./ /opt/pycmdstan/
+RUN mkdir -p /opt/cmdstanpy
+WORKDIR /opt/cmdstanpy
+ADD ./ /opt/cmdstanpy/

LICENSE

@@ -1,4 +1,4 @@
-Copyright 2019
+Copyright 2019 Stan Dev Team
 
    Licensed under the Apache License, Version 2.0 (the "License");
    you may not use this file except in compliance with the License.

pycmdstan/io.py → cmdstanpy/io.py

@@ -4,8 +4,11 @@
 """
 
 import re
+import logging
 import numpy as np
 
+logger = logging.getLogger('cmdstanpy.io')
+
 
 def _rdump_array(key, val):
     c = 'c(' + ', '.join(map(str, val.T.flat)) + ')'

pycmdstan/model.py → cmdstanpy/model.py

@@ -9,7 +9,7 @@
 import numpy as np
 from . import io
 
-logger = logging.getLogger('pycmdstan.model')
+logger = logging.getLogger('cmdstanpy.model')
 
 
 class CmdStanNotFound(RuntimeError):
@@ -87,7 +87,7 @@ def model_path() -> str:
     key = 'PYCMDSTAN_MODEL_PATH'
     if key not in os.environ:
         os.environ[key] = os.path.join(
-            os.path.expanduser('~'), '.cache', 'pycmdstan')
+            os.path.expanduser('~'), '.cache', 'cmdstanpy')
     if not os.path.exists(os.environ[key]):
         logger.debug(f'creating cache dir {os.environ[key]}')
         try:

pycmdstan/tests.py → cmdstanpy/tests.py

@@ -97,7 +97,7 @@ def test_code_from_file(self):
 
 
 class TestMetrics(BaseTestCase):
-    # cache model on test machine and cover code path for ~/.cache/pycmdstan/...
+    # cache model on test machine and cover code path for ~/.cache/cmdstanpy/...
     use_tmp = False
 
     model_code = '''

docs/conf.py

@@ -138,7 +138,7 @@
 
 # One entry per manual page. List of tuples
 # (source start file, name, description, authors, manual section).
-man_pages = [(master_doc, 'pycmdstan', 'PyCmdStan Documentation', [author], 1)]
+man_pages = [(master_doc, 'cmdstanpy', 'PyCmdStan Documentation', [author], 1)]
 
 # -- Options for Texinfo output ----------------------------------------------
 

setup.py

@@ -22,14 +22,14 @@ def readme_contents() -> str:
 """
 
 setuptools.setup(
-    name='pycmdstan',
+    name='cmdstanpy',
     version='0.9',
     description='Python interface to CmdStan',
     long_description=readme_contents(),
     long_description_content_type="text/markdown",
     author='Stan Dev Team',
     url='https://github.com/stan-dev/cmdstanpy',
-    packages=['pycmdstan'],
+    packages=['cmdstanpy'],
     install_requires='numpy filelock'.split(),
     classifiers=_classifiers.strip().split('\n'),
 )