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Feature/issue 2682 add 7 parameter ddm pdf #2822

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2a097be
Adding LPDF for 7-parameter drift-diffusion model
Franzi2114 Feb 7, 2022
48362d3
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Oct 7, 2022
a773f29
hcubature: Changed sqrt to std::sqrt and pow to std::pow
vpratz Oct 7, 2022
ece77e8
Merge branch 'issue-2682-Add-7-parameter-DDM-PDF' of github.com:Franz…
Franzi2114 Oct 10, 2022
651391b
update for cpplint-error
Franzi2114 Oct 10, 2022
b8d5bd5
corrected for error in operands_and_partials
Franzi2114 Oct 10, 2022
f8b3120
Merge branch 'stan-dev:develop' into feature/issue-2682-Add-7-paramet…
Franzi2114 Oct 20, 2022
51392dd
adapted constants
Franzi2114 Oct 20, 2022
60ec161
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Oct 20, 2022
e47ee70
Merge branch 'stan-dev:develop' into feature/issue-2682-Add-7-paramet…
Franzi2114 Jan 2, 2023
d54199a
Removed old version of hcubature
Franzi2114 Jan 29, 2023
d0808c1
Merge branch 'stan-dev:develop' into feature/issue-2682-Add-7-paramet…
Franzi2114 Jan 29, 2023
0ba5d42
int Meval
Franzi2114 Jan 29, 2023
78e6160
changed name check_scalar_types_2
Franzi2114 Jan 30, 2023
9156151
Merge branch 'stan-dev:develop' into feature/issue-2682-Add-7-paramet…
Franzi2114 Jan 31, 2023
f5f3286
removed warranty + toplevel comments, changed names, using, constants…
Franzi2114 Mar 23, 2023
2b03fb9
Merge commit '98117fa4616d50d9544fed882c5a5c2b9803cf85' into HEAD
yashikno Mar 23, 2023
2bad948
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Mar 23, 2023
9cae117
#include constants.hpp
Franzi2114 Mar 24, 2023
46558d4
new structure, no obsolete templates, new ordering of arguments
Franzi2114 Mar 27, 2023
1349385
Merge commit '4fdc43b8c13cb2e31858c699a7e70728980ce897' into HEAD
yashikno Mar 27, 2023
e222428
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Mar 27, 2023
a44b3ef
headers, fun->prob
Franzi2114 Mar 28, 2023
8de656b
Merge commit '6cd15b88d16dbace9ee4ce9d27997901159c44e7' into HEAD
yashikno Mar 28, 2023
8d346fb
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Mar 28, 2023
c4787c1
delete obsolete comments
Franzi2114 Mar 28, 2023
7415ba1
insert inline
Franzi2114 Apr 4, 2023
4780078
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Apr 4, 2023
e025a3b
restructure tests: var->rev
Franzi2114 Apr 4, 2023
a83da48
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Apr 4, 2023
a006c4e
hcubature struct to tuple
andrjohns May 4, 2023
d7d0ead
Simplify wiener7 functors
andrjohns May 4, 2023
f376dd3
First pass refactoring wiener7
andrjohns May 5, 2023
27c16c8
Merge commit 'edea18332e8d919684ac3314f85351e135056bbb' into HEAD
yashikno May 5, 2023
62dc99b
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 5, 2023
31cccef
Fix wiener_prec test
andrjohns May 5, 2023
44bcbba
Multiple translation units fix
andrjohns May 5, 2023
91b88ec
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 5, 2023
fdbedd3
Simplify wiener7 functions
andrjohns May 6, 2023
bd726b7
cpplint
andrjohns May 6, 2023
baf04ac
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 6, 2023
cc5f66b
Scope
andrjohns May 6, 2023
29a17dd
First pass refactor wiener5
andrjohns May 6, 2023
b2fa83e
First pass simplify wiener5 refactor
andrjohns May 7, 2023
ef8bf7c
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
0e4a311
Consolidate wiener5 functions
andrjohns May 7, 2023
cefd7c7
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
550aa89
Consolidate wiener7 deriv
andrjohns May 7, 2023
002f3cd
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
15c4b4a
Further consolidate functions
andrjohns May 7, 2023
e5e58d7
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
d0598d2
Simplify wiener5
andrjohns May 7, 2023
1c7a509
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
96ec686
Additional simplifications
andrjohns May 7, 2023
4450855
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 7, 2023
cb09fbe
Fix test, consolidate wiener7 derivs
andrjohns May 8, 2023
c7203da
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 8, 2023
3f61fe9
Simplify rev test
andrjohns May 8, 2023
23cea74
Update doc
andrjohns May 10, 2023
296a3a9
Merge commit '111f7832a17aa338bb454146f4ab3c6ba66c9e7f' into HEAD
yashikno May 10, 2023
3dfa50f
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 10, 2023
290ef4a
Update comp
andrjohns May 10, 2023
777ba44
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 10, 2023
9949103
Fix hang due to zero return
andrjohns May 10, 2023
8f1cb4a
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 10, 2023
7832886
wiener7 to wiener_full
andrjohns May 11, 2023
afd3bb1
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 11, 2023
91ba08b
Refactor to functions
andrjohns May 15, 2023
dd63105
Merge branch 'develop' into feature/issue-2682-Add-7-parameter-DDM-PD…
andrjohns May 15, 2023
3ff1401
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 15, 2023
4880c6a
Other comments
andrjohns May 15, 2023
54f50d4
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 15, 2023
a4c1da8
Resolve comments, add function docs
andrjohns May 24, 2023
fee0f07
Merge commit 'f40a2d118dc52a22d1fcb64e939e3e1739d7b391' into HEAD
yashikno May 24, 2023
655cd79
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 24, 2023
485bd56
Doxygen
andrjohns May 24, 2023
6913848
Additional comments
andrjohns May 25, 2023
41fbb3b
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot May 25, 2023
75b3175
all values are computed correctly
Franzi2114 Jun 26, 2023
8a3e678
rename variables
Franzi2114 Jun 26, 2023
212c078
changes hcubature
Franzi2114 Jul 26, 2023
0e55df5
Merge commit '2e87ecadc075bab42fd7a51178ce33ae2f6c3ccc' into HEAD
yashikno Jul 26, 2023
ea7d2af
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jul 26, 2023
43da07f
delete };
Franzi2114 Jul 26, 2023
d8dc1e0
bring increment into signcombo
Franzi2114 Jul 26, 2023
9c2bbe4
fixes
SteveBronder Jul 26, 2023
a68fafb
cleanup hcubature
SteveBronder Jul 28, 2023
ceaa274
remove some unneeded functors, general cleanup
SteveBronder Jul 28, 2023
0ad9fff
Merge pull request #2 from stan-dev/fix/7-param-ddm
Franzi2114 Jul 31, 2023
cfefed6
changes in names and docs
Franzi2114 Jul 31, 2023
741ea19
Merge commit '504107d0a12cf04507cc4d3a23bf58ae151d191f' into HEAD
yashikno Jul 31, 2023
97af29c
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jul 31, 2023
b24deca
doc
Franzi2114 Jul 31, 2023
39ce59c
make a, b into Eigen vectors instead of std vectors
SteveBronder Jul 31, 2023
12f6154
Merge pull request #3 from stan-dev/fix/weiner_lpdf_full2
Franzi2114 Aug 1, 2023
0d188e9
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 1, 2023
24759b4
changed test
Franzi2114 Aug 1, 2023
58b3e6b
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 1, 2023
b36ce42
delete ErrIndex
Franzi2114 Aug 1, 2023
e3eeb19
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 1, 2023
ddc6247
back to ErrIndex
Franzi2114 Aug 1, 2023
3fe5b71
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 1, 2023
34de93a
Merge branch 'develop' into issue-2682-Add-7-parameter-DDM-PDF
Franzi2114 Aug 8, 2023
6142042
start setting up code to be vectorized
SteveBronder Aug 9, 2023
d583d0c
bugfix wiener5, cite Henrich et al.
Franzi2114 Aug 10, 2023
3e8cedd
change [=] to [&] in rev test
Franzi2114 Aug 11, 2023
d0bf125
merge verctorization
Franzi2114 Aug 11, 2023
fb33e74
change [=] to [&] in rev test
Franzi2114 Aug 11, 2023
778c234
merge vectorization
Franzi2114 Aug 11, 2023
969dbb1
Merge commit '38289cd2c731c0458a5437ab687638de8d35fe50' into HEAD
yashikno Aug 11, 2023
def6d26
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 11, 2023
937b840
extend rev test
Franzi2114 Aug 14, 2023
2dfd862
Merge commit 'd4eab2773347ca6fbe03d49f70828c08ff248269' into HEAD
yashikno Aug 14, 2023
b10e216
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Aug 14, 2023
453360b
new line
Franzi2114 Aug 14, 2023
db5b67d
more partial types
Franzi2114 Aug 16, 2023
faa0f33
added test file
Franzi2114 Aug 17, 2023
4ef8810
some types changed
Franzi2114 Aug 29, 2023
f909cfc
wiener5 mix test
Franzi2114 Sep 16, 2023
11598d8
test for wiener5, first attempt
Franzi2114 Sep 19, 2023
8efd583
another error in math::apply
Franzi2114 Sep 20, 2023
86976ac
it works a bit more, still some errors
Franzi2114 Sep 30, 2023
0c17681
hcubature resize error in combo solved
Franzi2114 Oct 10, 2023
ec18781
yey, one error gone
Franzi2114 Oct 13, 2023
140b9fe
no commentation
Franzi2114 Oct 13, 2023
e48c6a2
wiener_full mix tests run successfully!!!!
Franzi2114 Oct 13, 2023
a5a96c1
all wiener_full_tests work!
Franzi2114 Oct 14, 2023
a599485
add some T_partials_return
Franzi2114 Oct 20, 2023
49bad10
add scalar to docu text
Franzi2114 Oct 20, 2023
064eb70
only 1 test in full
Franzi2114 Oct 20, 2023
cf8d98d
test mix test
Franzi2114 Oct 20, 2023
d4737a6
wiener_full mix tests
Franzi2114 Oct 20, 2023
ccd9d71
mix tests for wiener5
Franzi2114 Oct 20, 2023
5da36e4
new names mix tests
Franzi2114 Oct 20, 2023
641d5f1
new name prob test
Franzi2114 Oct 20, 2023
dc5e37a
prob test
Franzi2114 Oct 20, 2023
fe96d18
expect_near in wiener_full
Franzi2114 Oct 20, 2023
6e469ef
test test
Franzi2114 Oct 23, 2023
f76d4cd
test
Franzi2114 Oct 23, 2023
141c044
test
Franzi2114 Oct 23, 2023
b6373e0
some changes
Franzi2114 Oct 23, 2023
853a46a
two small changes
Franzi2114 Oct 23, 2023
99e9c70
new comment
Franzi2114 Oct 23, 2023
b73c9e0
hcubature ok
Franzi2114 Oct 23, 2023
9569327
merge develop, hcubature ok
Franzi2114 Oct 23, 2023
0d23581
merge auto-types branch
Franzi2114 Oct 23, 2023
a859ae7
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Oct 23, 2023
7f1b0a7
add new line, delete test test
Franzi2114 Oct 23, 2023
2adc7ac
all tests successful
Franzi2114 Dec 20, 2023
bc49f2d
Merge commit '013bb8bd123532d51e14271404cf180cee5ac632' into HEAD
yashikno Dec 20, 2023
940ce63
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Dec 20, 2023
501c8d4
cleaning up hcubature
SteveBronder Jan 8, 2024
9672804
remove Scalar template parameter from wiener5
SteveBronder Jan 9, 2024
96ad22d
update inline and run clang-format
SteveBronder Jan 10, 2024
e937a11
Merge pull request #5 from stan-dev/fix3/wiener5
Franzi2114 Jan 11, 2024
371232f
Merge commit '0061d8fb2e654fb63d3a5975fe10e26fdabce28f' into HEAD
yashikno Jan 11, 2024
b7291b5
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
b1eabb4
add newline in util.hpp
Franzi2114 Jan 11, 2024
c2cfef5
unique test names
Franzi2114 Jan 11, 2024
fc41c9a
correct names in prob test
Franzi2114 Jan 11, 2024
517c3cb
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
cda357b
docs
Franzi2114 Jan 11, 2024
c562097
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
45adcdb
correct docs
Franzi2114 Jan 11, 2024
c68aba3
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
3eb9561
correct function name in rev
Franzi2114 Jan 11, 2024
2c5eb79
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
24e4350
mix test values in util
Franzi2114 Jan 11, 2024
c2c816d
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 11, 2024
29e3ec9
different names, requested changes
Franzi2114 Jan 16, 2024
c624381
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 16, 2024
4fe653b
signature hcubature
Franzi2114 Jan 16, 2024
a723270
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 16, 2024
6fb66ef
hcubature auto
Franzi2114 Jan 17, 2024
8176763
Merge commit '2f4c92dc57cc924744f1078a230df20657e6d810' into HEAD
yashikno Jan 17, 2024
0de5b43
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 17, 2024
1d75a39
hcubature with boost::gauss_kronrod
Franzi2114 Jan 18, 2024
0292ede
clean includes
Franzi2114 Jan 18, 2024
e105ae9
Merge remote-tracking branch 'origin/develop' into issue-2682-Add-7-p…
SteveBronder Jan 31, 2024
e3715bf
merge develop and revert hcubature to use internal gauss kronrod
SteveBronder Jan 31, 2024
9f83552
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 31, 2024
70bda57
update tests for more extreme values
SteveBronder Jan 31, 2024
5200f9f
make wiener7_integrate lambdas more locally scoped. Add more extreme …
SteveBronder Jan 31, 2024
bd563cc
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Jan 31, 2024
8ebecc7
change forward_as_tuple to make_tuple
SteveBronder Feb 1, 2024
b9322ba
Merge commit '967e86d08a76e561c779f4d3aee72fdb95420cd7' into HEAD
yashikno Feb 1, 2024
fa79c6a
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 1, 2024
5f25580
update compute_error_term template order
SteveBronder Feb 1, 2024
c6724cc
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 1, 2024
778de80
split and rename wiener5_n_terms_large_t
Franzi2114 Feb 6, 2024
e4d8cde
inline and delete wiener5_density_part_one
Franzi2114 Feb 6, 2024
648d511
delete doubled size check in wiener_full
Franzi2114 Feb 6, 2024
9bb980d
possible to call wiener_lpdf(y,a,t0,w,v) and wiener_lpdf(y,a,t0,w,v,sv)
Franzi2114 Feb 6, 2024
97418a5
Merge commit '8e4e4e6ffcf643a47849f18da64bc98ea2a37331' into HEAD
yashikno Feb 6, 2024
3485d1a
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 6, 2024
e7b4b9f
whitespace
Franzi2114 Feb 6, 2024
025cab3
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 6, 2024
33793f0
newline
Franzi2114 Feb 6, 2024
cea2d39
Minor tidying for log_sum_exp helper function
andrjohns Feb 15, 2024
4cc95d4
uncomment include
Franzi2114 Feb 15, 2024
9d7f821
header tests
Franzi2114 Feb 15, 2024
fdda1d5
Merge commit 'c6254fbd45662b94189fff04f58f3b2f748da428' into HEAD
yashikno Feb 15, 2024
57e272b
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 15, 2024
6794454
!N to N==0
Franzi2114 Feb 16, 2024
899652e
docu
Franzi2114 Feb 16, 2024
5904b52
[Jenkins] auto-formatting by clang-format version 10.0.0-4ubuntu1
stan-buildbot Feb 16, 2024
ff03a92
Merge remote-tracking branch 'origin/develop' into HEAD
SteveBronder Feb 20, 2024
3979ff5
remove obsolete includes
Franzi2114 Feb 28, 2024
b4353c4
update docs
Franzi2114 Feb 28, 2024
bb12079
Jenkinsfile from develop branch
Franzi2114 Mar 1, 2024
2d5d4f7
Revert stray Jenkinsfile changes
andrjohns Mar 7, 2024
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2 changes: 2 additions & 0 deletions stan/math/prim/fun.hpp
Original file line number Diff line number Diff line change
Expand Up @@ -368,6 +368,8 @@
#include <stan/math/prim/fun/variance.hpp>
#include <stan/math/prim/fun/welford_covar_estimator.hpp>
#include <stan/math/prim/fun/welford_var_estimator.hpp>
#include <stan/math/prim/fun/wiener5_lpdf.hpp>
#include <stan/math/prim/fun/wiener7_lpdf.hpp>
#include <stan/math/prim/fun/zeros_array.hpp>
#include <stan/math/prim/fun/zeros_int_array.hpp>
#include <stan/math/prim/fun/zeros_row_vector.hpp>
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