Ubuntu ERROR: compilation failed for package 'rstan' * removing ~/R/

[ghost]

Summary:

Please provide a short summary (no more than a sentence or two).
Rstan fails to install rstan when installing from the command line.

Description:

I have launched an interactive bash terminal in a docker container running Ubuntu Bionic 18.04. I have installed Rstudio and can call R from the command line. in the R CLI I call install.packages("rstan") command and the majority of the dependencies install. However, make fails when trying to make the target 'stan/lang/grammars/statement_grammar_inst.o' and exits with Error code 4

Also when looking for the README.Bugs files, See file:///usr/share/doc/gcc-7/README.Bugs for instructions., it does not exist in the given file location on my container.

Reproducible Steps:

# Get basic kernel OS image
FROM ubuntu

# make a new user
RUN adduser username && usermod -aG sudo username
RUN su - username

## install debian packages
RUN apt-get update -qq && apt-get -y --no-install-recommends install \
libxml2-dev \
libcairo2-dev \
libsqlite3-dev \
libmariadbd-dev \
libpq-dev \
libssh2-1-dev \
unixodbc-dev \
libcurl4-openssl-dev \
libssl-dev \
gnupg2

## create directories
RUN mkdir -p /home/R/data
RUN mkdir -p /home/R/code
RUN mkdir -p /home/R/output

# Get rstudio to use markdown
FROM rocker/rstudio:3.6.1
FROM jrnold/rstan

# Install dependencies
COPY dependencies/install_packages.R /home/R/install_packages.R

# necessary to view rstudio outputs
ENV PASSWORD 

# set the working diretory in the container to /home/R
WORKDIR /home/R

# run install file for R.
RUN Rscript install_packages.R

Current Output:

g++: internal compiler error: Killed (program cc1plus)
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-7/README.Bugs> for instructions.
/usr/lib/R/etc/Makeconf:168: recipe for target 'stan/lang/grammars/statement_grammar_inst.o' failed
make: *** [stan/lang/grammars/statement_grammar_inst.o] Error 4
ERROR: compilation failed for package 'rstan'
* removing '/home/dakarai/R/../3.4/rstan'

The downloaded source packages are in
	'/tmp/Rtmpt9vHb0/downloaded_packages'
Warning message:
In install.packages("rstan") :
  installation of package 'rstan' had non-zero exit status

RStan Version:

The version of RStan you are running (e.g., from packageVersion("rstan"))

R Version:

The version of R you are running (e.g., from R.version.string)

Operating System:

Mac OS Catalina

[bgoodri]

You ran out of RAM