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Starred Repositories
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The complete sequence of a human genome
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GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered polymorphisms in read sets using genome-graphs.
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Graph-based alignment (Hierarchical Graph FM index)
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Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
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Tools for fast and flexible genome assembly scaffolding and improvement
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Structural variation caller using third generation sequencing
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cDNA read preprocessing
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Circular visualization in R
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A tool set for short variant discovery in genetic sequence data.
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Complex structural variant detection from WGS data