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@mktrost mktrost released this 20 Feb 15:11
· 39 commits to master since this release
v1.0.13
f9636ca

LibStatGen.1.0.13 Release Notes - Released 2/20/2015

  • https://github.com/statgen/libStatGen/archive/v1.0.13.tar.gz
  • Contains classes for general processing (string, reference file, parameters), bam, glf, fastq, and vcf
  • General Updates:
    • Added knetfile support to InputFile (only for bgzf files if KNET_ON=1 is set on compile line
    • GzipHeader - fix signed/unsigned comparison compile issue
    • Upgrade bgzf (also allow append mode)
  • Makefiles Updates:
    • Update dependencies to fix/improve some compiling issues
  • PhoneHome Updates:
    • Allow PhoneHome to be a legacy parameter
    • Update new version available message to stand out more
    • Fix bugs in checks for new version since it wasn't finding it.
  • BAM Updates:
    • SamReferenceInfo operator== - fix to not check hash, since hash could be different for same info
    • Pileup - improve error message for buffer overrun
  • VCF Updates:
    • Add option to update GT field
    • Add subset samples parameter to ReadRecord
    • Improve handling of adding CO header
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