prepare release of v0.2.0

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: coala
-Version: 0.1.1.9017
-Date: 2015-11-05
+Version: 0.2.0
+Date: 2015-11-11
 License: MIT + file LICENSE
 Title: A Framework for Coalescent Simulation
 Authors@R: c(

NEWS.md

@@ -0,0 +1,50 @@
+coala 0.2.0
+===========
+
+## Major improvements
+* Adds support for distribution independent repetitions on multiple CPU 
+  cores (#116).
+* Improves support for polyploid models. The `ploidy` parameter is now
+  provided in the `coal_model` instead of in `feat_unphased` (#115).
+* Adds the MCMF summary statistic (#94).
+* Adds support for the omega statistic using OmegaPlus (#109).
+
+## Small Changes
+* Adds option to calculate iHS in `sumstat_ihh()` and made the statistic return
+  a `data.frame` instead of a list. 
+* Adds optional support for calculating the JSFS per locus instead of 
+  globally (#112).
+* Adds optional in-place transformation of summary statistics (#110).
+* Adds support for simulating a fixed number of mutations with ms and 
+  msms (#19).
+* Writes seq-gen output into memory instead of in files before it is 
+  parsed (#99).
+* Adds optional support for parameter zero inflation for a deterministic
+  fraction of loci instead of a random number. Can be used by setting
+  `random = FALSE` in `par_zero_inflation` (#97).
+* `get_outgroup` now returns `NA` if the model has no outgroup rather than 
+  throwing an error.
+
+## Bug Fixes
+* Fixes the simulation of sizes changes in one populations models with msms (#105).
+* Remove broken implementation of the nSL statistic (`sumstat_nsl()`)
+* Fixes site frequency calculation when an outgroup is present (#96).
+* Fixes multiple errors that occurred in edge cases when calculating ihh (#98).
+
+
+
+coala 0.1.1
+===========
+
+* Fixes a memory corruption that occurred only in tests (#90).
+* Updates `README.md`.
+* Corrects various typos.
+
+
+
+coala 0.1.0
+===========
+
+* Initial release version
+* Thanks to Ann Kathrin Huylmans for suggesting the name 'coala' and
+  to Soumya Ranganathan for proofreading.

cran-comments.md

@@ -1,10 +1,8 @@
-This fixes the invalid read found by valgrind:
-http://www.stats.ox.ac.uk/pub/bdr/memtests/valgrind/coala/tests/testthat.Rout
-Sorry for the inconvenience.
+Please consider this new version of coala for publication on CRAN.
 
 ## Test environments
-* Ubuntu 15.04 (local), R 3.2.1
-* Ubuntu 12.04 (on Travis-CI), R 3.2.1
+* Ubuntu 15.10 (local), R 3.2.2
+* Ubuntu 12.04 (on Travis-CI), R 3.2.2
 * Windows (on AppVeyor), R-devel
 * win-builder (R-devel and R-release)
 
@@ -13,21 +11,3 @@ There were no ERRORs or WARNINGs.
 
 There were 2 NOTEs:
 
-* checking CRAN incoming feasibility ... NOTE
-Maintainer: 'Paul Staab <develop@paulstaab.de>'
-
-Days since last update: 3
-
-License components with restrictions and base license permitting such:
-  MIT + file LICENSE
-File 'LICENSE':
-  YEAR: 2015
-  COPYRIGHT HOLDER: Paul Staab
-
-
-
-* checking package dependencies ... NOTE
-  No repository set, so cyclic dependency check skipped
-
-  Seen only on win-builder.
-