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Calculation of sfs for all populations fails if an outgroup is present #96

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paulstaab opened this issue Aug 20, 2015 · 0 comments · Fixed by #102
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Calculation of sfs for all populations fails if an outgroup is present #96

paulstaab opened this issue Aug 20, 2015 · 0 comments · Fixed by #102
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bug
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0.2.0

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@paulstaab
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coala_model <- coala::coal_model(c(5, 5, 2), 1) +
    coala::feat_outgroup(3) +
    coala::feat_migration(par_range("m", .1, 5), symmetric = TRUE) +
    coala::feat_mutation(par_range("theta", .1, 5), model = "HKY", 
                         tstv_ratio = 1.6, 
                         base_frequencies = rep(.25, 4)) +
    coala::sumstat_sfs("sfs", population = "all") +
    coala::sumstat_jsfs("jsfs")

Simulation gives Error: Seg. Sites has too few rows.
@paulstaab paulstaab added the bug label Aug 20, 2015
@paulstaab paulstaab added this to the 0.1.2 milestone Aug 20, 2015
@paulstaab paulstaab modified the milestones: 0.1.2, 0.2.0 Sep 14, 2015
paulstaab added a commit that referenced this issue Oct 5, 2015
@paulstaab
fix calculation of sfs with an outgroup present
d46e398 
fixes #96
@paulstaab paulstaab mentioned this issue Oct 5, 2015
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Fix calculation of sfs with an outgroup present statgenlmu/coala
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@paulstaab