Merge pull request #57 from jaebeom-kim/master

Change the message printed when matchBuffer overflowed
steineggerlab · Mar 13, 2024 · 530b2df · 530b2df
2 parents 9dd746e + 1a7e929
commit 530b2df
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/src/commons/Classifier.cpp b/src/commons/Classifier.cpp
@@ -125,10 +125,11 @@ void Classifier::startClassify(const LocalParameters &par) {
                 numOfTatalQueryKmerCnt += queryKmerBuffer.startIndexOfReserve;
             } else { // search was incomplete
                 // Increase matchPerKmer and try again 
-                matchPerKmer *= 2;
+                matchPerKmer += 4;
                 // delete kseq1;
                 // delete kseq2;
-                cout << "The search was incomplete. Increasing --match-per-kmer to " << matchPerKmer << " and trying again." << endl;
+                cout << "--match-per-kmer was increased to " << matchPerKmer << " and searching again..." << endl;
+                // cout << "The search was incomplete. Increasing --match-per-kmer to " << matchPerKmer << " and trying again..." << endl;
                 break;
             }
          }

diff --git a/src/commons/KmerMatcher.cpp b/src/commons/KmerMatcher.cpp
@@ -459,7 +459,7 @@ querySplits, queryKmerList, matchBuffer, cout, targetDiffIdxFileName, numOfDiffI
         } // End of omp parallel
 
         if (hasOverflow) {
-            std::cout << "overflow!!!" << std::endl;
+            // std::cout << "overflow!!!" << std::endl;
             return false;
         }
     } // end of while(completeSplitCnt < threadNum)