Skip to content

7-04e0ec8

Compare
Choose a tag to compare
@martin-steinegger martin-steinegger released this 15 Jun 03:29
· 244 commits to master since this release

At a glance: Downloadable pdb database can be searched with --cluster-search 1. Many createdb improvements and other bug fixes.

Features

  • createdb properly warns and exits if no protein chain can be extracted (a146142, #134)
  • createdb separates PDB/mmCIF MODEL records into different source/lookup entries (d488f4a)
  • createdb filters out structures that are not proteins (d48d389)
  • databases downloader supports cluster databases (ef768f4)
  • pdb database creation script has been updated to produce a cluster database that can be searched with --cluster-search 1 (8eb36a2)

Bug fixes

  • Fixed a bug with block-aligner where long protein sequences would error out (0627447) Thanks @Daniel-Liu-c0deb0t!
  • Foldseek can be compiled without zlib, fixed an issue with zlib linking to gemmi (0832bef, 1a038db)
  • Fixed Dockerfile to drop backports as its not needed with Debian bookworm (04e0ec8)

Others

  • Made compressca an expert tool, hiding it from the default view to avoid confusion. (e4fe5be)

Developers