- analysis: Rmd files for investigations; will generate figures in figure/ subdirectory
- R: R scripts/functions used in analysis; no code that is actually run put here
- output: largish files of data, typically created by code (eg postprocessed data, simulations)
- code: code used for preprocessing, generation of output files etc ; may be long-running
- data: datasets that generally will not change once deposited
- paper: the paper
- talks: any presentations