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setup.Rmd
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setup.Rmd
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---
title: "Installation"
author: Xiang Zhu
output:
workflowr::wflow_html:
toc: false
editor_options:
chunk_output_type: console
---
Below are instructions for installing RSS software.
In a standard computing environment with internet connection,
the installation time is typically less than 10 minutes.
## [RSS based on MCMC](setup_mcmc.html)
[This page](setup_mcmc.html) shows how to install the
[Monte Carlo Markov chain (MCMC)](https://en.wikipedia.org/wiki/Markov_chain_Monte_Carlo)
scripts in [`rss/src/`](https://github.com/stephenslab/rss/tree/master/src).
These MCMC scripts have been tested in the following environments:
- version 8.4.0.150421 (R2014b) of MATLAB for 64-bit Linux
- version 8.2.0.701 (R2013b) of MATLAB for 64-bit Linux
- version 8.1.0.604 (R2013a) of MATLAB for 64-bit Linux
## [RSS based on VB](setup_vb.html)
[This page]((setup_vb.html)) shows how to install the
[Variational Bayes (VB)](https://en.wikipedia.org/wiki/Variational_Bayesian_methods)
scripts in [`rss/src_vb/`](https://github.com/stephenslab/rss/tree/master/src_vb).
These VB scripts have been tested in the following environments:
- version 9.3.0.713579 (R2017b) of MATLAB for 64-bit Linux
- version 8.4.0.150421 (R2014b) of MATLAB for 64-bit Linux
- version 8.2.0.701 (R2013b) of MATLAB for 64-bit Linux
- version 8.1.0.604 (R2013a) of MATLAB for 64-bit Linux