nextflow.config

params.outputDir = "output"
params.inputDir = "input"

manifest {
    author = 'Stephen Kelly'
    homePage = 'https://github.com/stevekm/nextflow-boilerplate'
    description = 'Boilerplate Nextflow pipeline'
    mainScript = 'main.nf'
}

report {
    // enabled = true
    file = "nextflow-report.html"
}

trace {
    enabled = true
    fields = "task_id,hash,native_id,process,tag,name,status,exit,module,container,cpus,time,disk,memory,attempt,submit,start,complete,duration,realtime,queue,%cpu,%mem,rss,vmem,peak_rss,peak_vmem,rchar,wchar,syscr,syscw,read_bytes,write_bytes"
    file = "trace.txt"
    raw = true
}

timeline {
    enabled = true
    file = "timeline-report.html"
}