Migrate to Jakarta EE 10, Jersey 3.x, and Jetty 12

Migrates `javax` namespaces to their `jakarta` counterparts.

Performs the following notable version bumps:

* Jakarta Servlet API: `4.0.1` -> `6.0.0` (latest)
* JAXB: `2.3.6` -> `4.0.5` (latest)
* Jersey: `2.41` -> `3.1.6` (latest)
* Jetty: `10.0.18` -> `12.0.9` (latest)

The following changes were necessary due to compatibility issues with Jakarta EE 10:

* `io.jsonwebtoken:jjwt`: `0.9.1` -> `0.12.5`
  * Signing and verifying of JWTs with Alpine's `SecretKey` no longer worked. I'm not sure why it worked before, but now the library complained about AES keys not being suitable for HMAC signing. I modified the `JsonWebToken` class to use Alpine's public/private key pair instead, which works. It changes the signature algorithm to `RS512`. I believe this change makes sense anyway.
* The default implementation of `jakarta.json` is Eclipse Parsson. Replaced `org.glassfish:javax-json` with it.
* The default implementation of `jakarta.mail-api` is Eclipse Angus. Added it.

Signed-off-by: nscuro <nscuro@protonmail.com>

alpine-executable-war/pom.xml

@@ -32,15 +32,13 @@
         <maven.uuidgenerator.plugin.version>1.0.1</maven.uuidgenerator.plugin.version>
 
         <!-- Dependency Versions -->
-        <lib.servlet-api.version>4.0.2</lib.servlet-api.version>
-        <lib.jetty.version>10.0.18</lib.jetty.version>
+        <lib.jetty.version>12.0.9</lib.jetty.version>
     </properties>
 
     <dependencies>
         <dependency>
             <groupId>jakarta.servlet</groupId>
             <artifactId>jakarta.servlet-api</artifactId>
-            <version>${lib.servlet-api.version}</version>
             <scope>provided</scope>
         </dependency>
         <dependency>
@@ -49,8 +47,8 @@
             <version>${lib.jetty.version}</version>
         </dependency>
         <dependency>
-            <groupId>org.eclipse.jetty</groupId>
-            <artifactId>jetty-webapp</artifactId>
+            <groupId>org.eclipse.jetty.ee10</groupId>
+            <artifactId>jetty-ee10-webapp</artifactId>
             <version>${lib.jetty.version}</version>
         </dependency>
         <dependency>
@@ -61,12 +59,10 @@
         <dependency>
             <groupId>org.slf4j</groupId>
             <artifactId>slf4j-api</artifactId>
-            <version>${lib.slf4j.version}</version>
         </dependency>
         <dependency>
             <groupId>ch.qos.logback</groupId>
             <artifactId>logback-classic</artifactId>
-            <version>${lib.logback.version}</version>
             <scope>runtime</scope>
         </dependency>
         <dependency>

alpine-executable-war/src/main/java/alpine/embedded/EmbeddedJettyServer.java

@@ -18,20 +18,19 @@
  */
 package alpine.embedded;
 
+import org.eclipse.jetty.ee10.servlet.ErrorPageErrorHandler;
+import org.eclipse.jetty.ee10.webapp.WebAppContext;
 import org.eclipse.jetty.server.Connector;
 import org.eclipse.jetty.server.HttpConfiguration;
 import org.eclipse.jetty.server.HttpConnectionFactory;
 import org.eclipse.jetty.server.Request;
+import org.eclipse.jetty.server.Response;
 import org.eclipse.jetty.server.Server;
 import org.eclipse.jetty.server.ServerConnector;
-import org.eclipse.jetty.servlet.ErrorPageErrorHandler;
-import org.eclipse.jetty.webapp.WebAppContext;
+import org.eclipse.jetty.util.Callback;
 import org.slf4j.Logger;
 import org.slf4j.bridge.SLF4JBridgeHandler;
 
-import javax.servlet.http.HttpServletRequest;
-import javax.servlet.http.HttpServletResponse;
-import java.io.IOException;
 import java.io.InputStream;
 import java.net.URL;
 import java.security.ProtectionDomain;
@@ -86,9 +85,9 @@ public static void main(final String[] args) throws Exception {
         context.setAttribute("org.eclipse.jetty.server.webapp.ContainerIncludeJarPattern", ".*/[^/]*taglibs.*\\.jar$");
 
         // Prevent loading of logging classes
-        context.getSystemClassMatcher().add("org.apache.log4j.");
-        context.getSystemClassMatcher().add("org.slf4j.");
-        context.getSystemClassMatcher().add("org.apache.commons.logging.");
+        context.getProtectedClassMatcher().add("org.apache.log4j.");
+        context.getProtectedClassMatcher().add("org.slf4j.");
+        context.getProtectedClassMatcher().add("org.apache.commons.logging.");
 
         final ProtectionDomain protectionDomain = EmbeddedJettyServer.class.getProtectionDomain();
         final URL location = protectionDomain.getCodeSource().getLocation();
@@ -118,8 +117,10 @@ private static void disableServerVersionHeader(Connector connector) {
      */
     private static class ErrorHandler extends ErrorPageErrorHandler {
         @Override
-        public void handle(String target, Request baseRequest, HttpServletRequest request, HttpServletResponse response) throws IOException {
+        public boolean handle(final Request request, final Response response, final Callback callback) throws Exception {
             response.setStatus(response.getStatus());
+            callback.succeeded();
+            return true;
         }
     }
 

alpine-model/src/main/java/alpine/model/About.java

@@ -24,7 +24,6 @@
 import com.fasterxml.jackson.annotation.JsonInclude;
 import com.fasterxml.jackson.annotation.JsonInclude.Include;
 
-import javax.inject.Singleton;
 import java.io.Serializable;
 import java.util.HashMap;
 import java.util.Map;
@@ -38,7 +37,6 @@
  * @author Steve Springett
  * @since 1.0.0
  */
-@Singleton
 public class About implements Serializable {
 
     private static final long serialVersionUID = -7573425245706188307L;

alpine-model/src/main/java/alpine/model/ApiKey.java

@@ -22,6 +22,9 @@
 import alpine.common.validation.RegexSequence;
 import com.fasterxml.jackson.annotation.JsonIgnore;
 
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Element;
 import javax.jdo.annotations.Extension;
@@ -32,9 +35,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.security.Principal;
 import java.util.Date;

alpine-model/src/main/java/alpine/model/ConfigProperty.java

@@ -21,16 +21,16 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 
 /**

alpine-model/src/main/java/alpine/model/EventServiceLog.java

@@ -20,13 +20,13 @@
 
 import com.fasterxml.jackson.annotation.JsonIgnore;
 
+import jakarta.validation.constraints.NotBlank;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.Index;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
-import javax.validation.constraints.NotBlank;
 import java.io.Serializable;
 import java.sql.Timestamp;
 

alpine-model/src/main/java/alpine/model/InstalledUpgrades.java

@@ -20,14 +20,14 @@
 
 import com.fasterxml.jackson.annotation.JsonIgnore;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.sql.Timestamp;
 

alpine-model/src/main/java/alpine/model/LdapUser.java

@@ -21,6 +21,9 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Element;
 import javax.jdo.annotations.Extension;
@@ -31,9 +34,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.security.Principal;
 import java.util.List;

alpine-model/src/main/java/alpine/model/ManagedUser.java

@@ -21,6 +21,10 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Element;
 import javax.jdo.annotations.Extension;
@@ -31,10 +35,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.security.Principal;
 import java.util.Date;

alpine-model/src/main/java/alpine/model/MappedLdapGroup.java

@@ -21,16 +21,16 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.util.UUID;
 

alpine-model/src/main/java/alpine/model/MappedOidcGroup.java

@@ -22,13 +22,13 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotNull;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotNull;
 import java.util.UUID;
 
 /**

alpine-model/src/main/java/alpine/model/OidcGroup.java

@@ -22,16 +22,16 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.util.UUID;
 

alpine-model/src/main/java/alpine/model/OidcUser.java

@@ -22,6 +22,9 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Element;
 import javax.jdo.annotations.Extension;
@@ -32,9 +35,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.security.Principal;
 import java.util.List;

alpine-model/src/main/java/alpine/model/Permission.java

@@ -22,6 +22,9 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Extension;
 import javax.jdo.annotations.IdGeneratorStrategy;
@@ -30,9 +33,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.util.List;
 

alpine-model/src/main/java/alpine/model/SchemaVersion.java

@@ -20,14 +20,14 @@
 
 import com.fasterxml.jackson.annotation.JsonIgnore;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.IdGeneratorStrategy;
 import javax.jdo.annotations.PersistenceCapable;
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 
 /**

alpine-model/src/main/java/alpine/model/Team.java

@@ -21,6 +21,10 @@
 import com.fasterxml.jackson.annotation.JsonIgnore;
 import com.fasterxml.jackson.annotation.JsonInclude;
 
+import jakarta.validation.constraints.NotBlank;
+import jakarta.validation.constraints.NotNull;
+import jakarta.validation.constraints.Pattern;
+import jakarta.validation.constraints.Size;
 import javax.jdo.annotations.Column;
 import javax.jdo.annotations.Element;
 import javax.jdo.annotations.Extension;
@@ -33,10 +37,6 @@
 import javax.jdo.annotations.Persistent;
 import javax.jdo.annotations.PrimaryKey;
 import javax.jdo.annotations.Unique;
-import javax.validation.constraints.NotBlank;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Pattern;
-import javax.validation.constraints.Size;
 import java.io.Serializable;
 import java.util.List;
 import java.util.UUID;