Shiny app for our Ciona cardiopharyngeal specification single cell RNA-seq data.
This shiny app is for local runs. You can also check the web interface at ShinyCiona.
The accompany paper is on bioRxiv.
First, you will need to install the following packages:
install.packages('shiny')
install.packages('gplots')
install.packages('RColorBrewer')
Follow the instructions to install Seurat.
Download the ShinyCiona project from github and the precomputed R objects.
Unzip the files and put the spatial.Robj and temporal.Robj under the ShinyCiona-master folder.
Open either ui.R or server.R in Rstudio and click Run App button. Now you get the ShinyCiona running on your laptop 🎉!