CRAN release v2.0.0
NEW FEATURES
- Two new built-in models: 'SISe_sp' and 'SISe3_sp' with spatial
coupling. - Added the 'run_outer' method to run a model on scaled 'gdata'
parameters.
IMPROVEMENTS
- Added two synthetic datasets 'u0_SISe3' and 'events_SISe3' to
demonstrate how to use SimInf. - Several improvements to the documentation.
- Added summary method to the siminf_model class and the
scheduled_events class.
CHANGES
- The slot N in scheduled_events is changed from dgCMatrix to matrix.
- Refactoring of the 'show' method for the siminf_model class and the
scheduled_events class. - Renamed function prototype 'PostTimeStepFun' to 'PTSFun' and
'PropensityFun' to 'TRFun'. - Renamed 'init' argument to 'u0' in the 'SISe' and 'SISe3' methods.
- Changed 'node', 'dest', 'select' and 'shift' to one-based indices in
'scheduled_events'.
BUG FIXES
- Changed to use 'gsl_rng_uniform_pos' instead of 'gsl_rng_uniform' to
avoid 0 in the direct SSA. If zero was randomly selected and the
first compartment empty, the simulator could enter a negative state.