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CRAN release v8.0.0

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@stewid stewid released this 13 Sep 08:11

This release of SimInf includes improvements and changes to facilitate
post-processing of trajectory data and future development of the
package.

IMPROVEMENTS

  • Added the 'compartments' and 'index' arguments to the 'boxplot' and
    'pairs' plotting methods to facilitate analysis of a simulated
    trajectory, see the documentation.

  • The build configuration script has been improved to identify if
    OpenMP can be used. It is also possible to skip the check for OpenMP
    if --disable-openmp is specified when installing the package.

BREAKING CHANGES

Backwards incompatible changes that are the reason why the major
version has been incremented.

  • The 'prevalence' function was changed to an S4 method. Moreover, the
    'type' character argument was renamed to 'level' and changed to an
    integer argument. The reason for renaming the 'type' argument was to
    prepare for improvements in the plot function in the future to
    display the prevalence but where there is already an argument called
    'type'. Additionally, the 'as.is' argument was renamed to 'format'
    for clarity. Finally, the unused '...' argument was removed. See the
    documentation for examples.

  • The 'trajectory' function was changed to an S4 method. Furthermore,
    the node index argument was renamed from 'node' to 'index' to
    facilitate future development where indices can also represent other
    structures in a model. Additionally, the 'as.is' argument was
    renamed to 'format' for clarity. Finally, the unused '...' argument
    was removed. See the documentation for examples.

  • The 'Nn' function to determine the number of nodes in a model has
    been replaced with the S4 method 'n_nodes'.