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fix: update naming conventions
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a-frantz committed Mar 25, 2021
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4 changes: 2 additions & 2 deletions docs/genomics-platform/workflow-guides/warden/index.md
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Expand Up @@ -78,8 +78,8 @@ Each row in the spreadsheet (except for the last row, which we will talk about i

!!!example Guidelines

* The sample name should be unique and should only contain letters, numbers, underscores and periods.
* The condition/phenotype column associates similar samples together. The values should contain only letters, numbers, underscores, and periods.
* The sample name should be unique and should only contain letters, numbers, and underscores. They should start with a letter. WARDEN will attempt to correct malformed names.
* The condition/phenotype column associates similar samples together. The values should contain only letters, numbers, and underscores. They should start with a letter. WARDEN will attempt to correct malformed names.
* If using WARDEN (FastQ):
* The third column should contain forward reads (e.g. `*.R1.fastq.gz` or `*_1.fastq.gz`).
* The fourth column will contain reads in reverse orientation to the FastQ in column three (e.g. `*.R2.fastq.gz` or `*_2.fastq.gz`).
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