changes

docs/pecan/expression/index.md

@@ -40,5 +40,5 @@ Further, the lasso enables a user to select a region on the plot to enable furth
 **Figure 3: Lasso.** A user can use the lasso feature to populate a table to retrieve a list of sampleIDs for the selected region.
 
 !!!warning
-Filtering by the sunburst will autopopulate the search with a specific key. A user can remove the text or click the subtypes on the right to continue exploring.
+Filtering by the sunburst will auto-populate the search with a specific key. A user can remove the text or click the subtypes on the right to continue exploring.
 !!!

docs/pecan/histology/index.md

@@ -2,7 +2,7 @@
 title: Histology
 ---
 ![Histology](./../histology.svg)
-**Overview:** Explore over 400 histology slides (H&E stained) that have been harmonized to our ontology disease hierarchy. *The remaining COMET slides are pending publication.*
+**Overview:** Explore ~400 histology slides (H&E stained) that have been harmonized to our ontology disease hierarchy. *The remaining COMET slides are pending publication.*
 
 **ADVANCED SEARCH** - The Histology homepage (**Figure 1**) will comprise an advanced search page enabling filtering of slides via metadata--diagnosis, subtype, sex, age, site, evaluation, site classification-- via drop-down lists. The return provides thumbnails with minimum data about the slide (e.g., subtype, sex, age, and SJID). Sample IDs can be searched individually.
 
@@ -23,11 +23,17 @@ This view (**Figure 2**) enables access to each histology slide via a “sample
 This view (**Figure 3**) enables the exploration of a sample slide via a slide image viewer page supported by OpenSeaDragon (feature listed below).
 
 **Features:**
+
 *Home*: refreshes the slide to the original state
+
 *Magnify+*: Zoom in
+
 *Magnify-*: Zoom out
+
 *Rotate left*: rotates slide left by 90 degrees
+
 *Rotate right*: rotates slide right by 90 degrees
+
 *Slidescale*: scale shows dimension
 
 ![](./slide_viewer.png)

docs/pecan/variants/index.md

@@ -20,7 +20,7 @@ Updating the filters will **not** update the sunburst selection, but it **will**
 !!!
 
 ![](./oncoprint_template.png)
-**Figure 2: Variants: Oncoprint view, with filtering.** This figure can be generated by following the subtype-centric user experience where a (i) diagnosis and/or subtype was selected from the sunburst landing page or (ii) a user selected a diagnosis and/or subtype filter -- the filters on the left will auto-populate based on the Sunburst filter selection and can later be customized.
+**Figure 2: Variants: Oncoprint view, with filtering.** This figure can be generated by following the subtype-centric user experience where a (i) diagnosis and/or subtype was selected from the sunburst landing page or (ii) a user selected a diagnosis and/or subtype filter -- the filters on the left will auto-populate based on the sunburst filter selection and can later be customized.
 
 !!!tip
 - The oncoprint is generated by ProteinPaint and therefore if a user alters the configs within the ProteinPaint UI (e.g, settings, sort, data, etc), the filters will not update, nor will PeCan save this state in the membrane.
@@ -69,7 +69,7 @@ The user will be given a GenomePaint view, supported by ProteinPaint, for all of
 
 Or, the user can filter the view based on the selected subtype (**Figure 7**).
 
-![](./genomepaint_moreinfo.png)
+![](./genomepaint_filtering.png)
 
 **Figure 7. GenomePaint view, with filtering.** This visualization will provide the basic GenomePaint view where the reference genome, Pediatric dataset, and the selected subtype data will show.