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made changes to the overview and citing our data page
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bgcurran committed Jan 25, 2021
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8 changes: 6 additions & 2 deletions docs/citing-stjude-cloud/index.md
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| St. Jude Cloud Resource | Reference |
| ------------------------------ | -------------------------------------------------------------------------------------------------------- |
| St. Jude Cloud Manuscript | [St. Jude Cloud paper](https://cancerdiscovery.aacrjournals.org/content/early/2021/01/08/2159-8290.CD-20-1230) |
| ProteinPaint | [ProteinPaint paper](https://www.nature.com/articles/ng.3466) |
| GenomePaint | paper in progress |
| GenomePaint | [GenomePaint paper](https://www.cell.com/cancer-cell/fulltext/S1535-6108(20)30659-0) |
| PeCan Pie | [PeCan Pie paper](https://genome.cshlp.org/content/29/9/1555.full) |
| ChIP-Seq Peak Calling | unpublished |
| Rapid RNA-Seq Fusion Detection | paper in progress |
| WARDEN | unpublished |
| Mutational Signatures | [Mutational Patterns paper](https://genomemedicine.biomedcentral.com/articles/10.1186/s13073-018-0539-0) |
| Mutational Signatures | [Mutational Patterns paper](https://www.nature.com/articles/s41586-020-1943-3) |
| cis-x | paper in progress |
| XenoCP | paper in progress |
| MethylationToActivity | [MethylationToActivity paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02220-y) |
| RNA-Seq Expression Classification | [CICERO paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-020-02043-x) |
| SequencErr | paper in progress |

<!-- NeoepitopePred | [NeoepitopePred paper](https://www.ncbi.nlm.nih.gov/pubmed/28854978) -->

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6 changes: 4 additions & 2 deletions docs/index.md
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title: Overview
---

!!!info
!!!info Announcing the St. Jude Cloud Paper
On January 6, 2021, an article about the St. Jude Cloud ecosystem was published in Cancer Discovery Journal, you can download the article here: [St. Jude Cloud - a Pediatric Cancer Genomic Data Sharing Ecosystem](https://cancerdiscovery.aacrjournals.org/content/early/2021/01/08/2159-8290.CD-20-1230).
!!!

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* [WARDEN Differential Expression Analysis](https://platform.stjude.cloud/workflows/warden)
* [Mutational Signatures](https://platform.stjude.cloud/workflows/mutational_signatures)
* [SequencErr](https://platform.stjude.cloud/workflows/sequencerr)
* M2A (coming soon)
* [MethylationToActivity (M2A)](https://platform.stjude.cloud/workflows/methylation-to-activity)
* [RNA-Seq Expression Classification](https://platform.stjude.cloud/workflows/rnaseq-expression-classification)
* [cis-X](https://platform.stjude.cloud/workflows/cis-x)

## Contact Us

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