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chore: remove extra paren #5

chore: remove extra paren

chore: remove extra paren #5

Workflow file for this run

name: pytest-workflow test
on: [push]
jobs:
list-tags:
runs-on: ubuntu-latest
outputs:
tags: ${{ steps.set-tags.outputs.tags }}
steps:
- name: checkout
uses: actions/checkout@v4
- name: set tags
id: set-tags
run: echo "tags=$(find tests -name '*.yaml' -exec yq --output-format yaml '.[].tags[] ' {} \;| sort | uniq | grep -vE 'deprecated|miniwdl|cellranger' | jq -ncR '[inputs]')" >> $GITHUB_OUTPUT
pytest_check:
needs: list-tags
runs-on: ubuntu-latest
strategy:
matrix:
tag: ${{ fromJson(needs.list-tags.outputs.tags) }}
steps:
- uses: actions/checkout@v4
with:
lfs: true
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.10'
- name: Install miniwdl and pytest-workflow
run: |
python -m pip install --upgrade pip
pip install -r requirements-dev.txt
- name: pull image
run: |
docker pull quay.io/biocontainers/gtfparse:2.5.0--pyh7cba7a3_0 &&
docker pull quay.io/biocontainers/gtfparse:1.2.1--pyh864c0ab_0
- name: Run pytest-workflow
run: |
pytest --git-aware --basetemp /home/runner/work/pytest --symlink --tag ${{ matrix.tag }}