chore: remove extra paren #5
Workflow file for this run
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name: pytest-workflow test | |
on: [push] | |
jobs: | |
list-tags: | |
runs-on: ubuntu-latest | |
outputs: | |
tags: ${{ steps.set-tags.outputs.tags }} | |
steps: | |
- name: checkout | |
uses: actions/checkout@v4 | |
- name: set tags | |
id: set-tags | |
run: echo "tags=$(find tests -name '*.yaml' -exec yq --output-format yaml '.[].tags[] ' {} \;| sort | uniq | grep -vE 'deprecated|miniwdl|cellranger' | jq -ncR '[inputs]')" >> $GITHUB_OUTPUT | |
pytest_check: | |
needs: list-tags | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
tag: ${{ fromJson(needs.list-tags.outputs.tags) }} | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
lfs: true | |
- name: Set up Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.10' | |
- name: Install miniwdl and pytest-workflow | |
run: | | |
python -m pip install --upgrade pip | |
pip install -r requirements-dev.txt | |
- name: pull image | |
run: | | |
docker pull quay.io/biocontainers/gtfparse:2.5.0--pyh7cba7a3_0 && | |
docker pull quay.io/biocontainers/gtfparse:1.2.1--pyh864c0ab_0 | |
- name: Run pytest-workflow | |
run: | | |
pytest --git-aware --basetemp /home/runner/work/pytest --symlink --tag ${{ matrix.tag }} |