chore: convert pytest to array job

.github/workflows/pytest-test.yaml

@@ -3,8 +3,22 @@ name: pytest-workflow test
 on: [push]
 
 jobs:
+  list-tags:
+    runs-on: ubuntu-latest
+    outputs:
+        tags: ${{ steps.set-tags.outputs.tags }}
+    steps:
+        - name: checkout
+          uses: actions/checkout@v4
+        - name: set tags
+          id: set-tags
+          run: echo "tags=$(find tests -name '*.yaml' -exec ~/Downloads/yq_darwin_amd64 --output-format yaml '.[].tags[] ' {} \;| sort | uniq | grep -vE 'deprecated|miniwdl|cellranger') | jq -ncR '[inputs]'" >> $GITHUB_OUTPUT
   pytest_check:
+    needs: list-tags
     runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        tag: ${{ fromJson(needs.list-tags.outputs.tags) }}
     steps:
     - uses: actions/checkout@v4
       with:
@@ -21,10 +35,6 @@ jobs:
       run: |
         docker pull quay.io/biocontainers/gtfparse:2.5.0--pyh7cba7a3_0 &&
         docker pull quay.io/biocontainers/gtfparse:1.2.1--pyh864c0ab_0
-    - name: filter tests
-      run: | 
-        find tests -name '*.yaml'| grep -v 'test_util.yaml' | xargs rm &&
-        find tests -name '*.yaml' -exec yq --output-format yaml -i 'del(.[] | select(.tags[] | test("reference|deprecated|cellranger") ) )' {} \;
     - name: Run pytest-workflow
       run: |
-        pytest --git-aware --basetemp /home/runner/work/pytest --symlink
+        pytest --git-aware --basetemp /home/runner/work/pytest --symlink --tag ${{ matrix.tag }}