GitHub - stnava/antsSurf: surface rendering with ants

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Name		Name	Last commit message	Last commit date
Latest commit History 15 Commits
ADNI_137_S_0158_MR_MPR__GradWarp__N3__Scaled_Br_20070306171702344_S20209_I42985BrainSegmentation.nii.gz		ADNI_137_S_0158_MR_MPR__GradWarp__N3__Scaled_Br_20070306171702344_S20209_I42985BrainSegmentation.nii.gz
ADNI_137_S_0158_MR_MPR__GradWarp__N3__Scaled_Br_20070306171702344_S20209_I42985CorticalThickness.nii.gz		ADNI_137_S_0158_MR_MPR__GradWarp__N3__Scaled_Br_20070306171702344_S20209_I42985CorticalThickness.nii.gz
GenerateBrainMesh.sh		GenerateBrainMesh.sh
GenerateBrainMesh2.sh		GenerateBrainMesh2.sh
GenerateBrainMesh3.sh		GenerateBrainMesh3.sh
README.Rmd		README.Rmd
antsSurfEx1.png		antsSurfEx1.png
antsSurfEx2.png		antsSurfEx2.png
blob.nii.gz		blob.nii.gz
brainSurf2.stl		brainSurf2.stl
brainSurface.stl		brainSurface.stl
totter.nii.gz		totter.nii.gz
tvtk_render.py		tvtk_render.py

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antsSurf
========

surface rendering with ants


```
 antsSurf -s [ wmt.nii.gz,255x255x255]  -d 0  -o brainSurface.stl
```

but also see

```
bash GenerateBrainMesh.sh
```


Example 1: Just a surface

![basic](https://raw.githubusercontent.com/stnava/antsSurf/master/antsSurfEx1.png)


Example 2: Surface plus overlay plus rotation

![basic](https://raw.githubusercontent.com/stnava/antsSurf/master/antsSurfEx2.png)