changed data validation: Now allow also dots and underscores in chrom…

…osome names
stschiff · Jul 9, 2018 · bf321de · bf321de
1 parent a3237d4
commit bf321de
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/Makefile b/Makefile
@@ -1,5 +1,5 @@
 # Set this variable to your static gsl libraries
-GSLDIR=/usr/lib
+GSLDIR=/usr/local/lib
 GSL=${GSLDIR}/libgsl.a ${GSLDIR}/libgslcblas.a
 
 release : build/release/msmc2

diff --git a/model/data.d b/model/data.d
@@ -53,8 +53,8 @@ class SegSite_t {
 }
 
 void checkDataLine(const char[] line) {
-  auto r = regex(r"^\w+\s\d+\s\d+\s[ACTG01\?,]+$");
-  enforce(match(line, r));
+  auto r = regex(r"^[A-Za-z0-9_.]+\s\d+\s\d+\s[ACTG01\?,]+$");
+  enforce(match(line, r), text("could not parse line: ", line));
 }
 
 unittest {