removing docker in prep for #17

.github/CONTRIBUTING.md

@@ -1,63 +1,8 @@
-# Contributing to the hoad project
+# Contributing to openairegraph
 
-This outlines how to propose a change to the hybrid open access dashboard (hoad). 
-
-
-## Project Structure
-
-Because hoad is not only a research project, but primarily a data product meant to be used by many, hoad is organised as an R package.
-
-Please adhere by the package development best practices laid out in:
-
-- Hadley Wickham's [R Packages](https://r-pkgs.org/index.html)
-- [rOpenSci Development Guide](https://devguide.ropensci.org/)
-
-
-### Documentation
-
-Individual functions are documented using [{roxygen2}](https://roxygen2.r-lib.org).
-Functions can be further organised using curated reference index in [{pkgdown}](https://pkgdown.r-lib.org/).
-
-Scientific articles, blog posts or any other long-form documentation is written as a [{pkgdown}](https://pkgdown.r-lib.org/) *article* inside the packages `/vignettes/` folder.
-These articles are written as `bookdown::html_document2()` documents *not* as proper R vignettes, to avoid duplicate publication and to allow more expensive computations.
-
-
-### Shiny Application
-
-tba.
-
-
-### Computing Environments
-
-There are two sets of computing environments on which this project is guaranteed to work as per the CI setup:
-
-1. The {hoad} package, including all its functions, is guaranteed to work (pass `R CMD check`) on a wide variety of computing environments as per the CI setup, a subset of the [tidyverse setup](https://github.com/r-lib/actions/tree/master/examples#quickstart-ci-workflow) and [r-hub linux builders](https://github.com/r-hub/rhub-linux-builders).
-  Because these tests can be quite extensive, they are only run on commits to `master`, as well as pull requests to `master`.
-  Other branches are thus not guaranteed to work.
-2. All other elements of this projects can be reproduced using a custom docker image in the `Dockerfile`:
-    - the [{pkgdown}](http://pkgdown.r-lib.org) website for hoad (https://subugoe.github.io/hoad/), including its articles (~ vignettes)
-    - the shiny web application
-    - (batch) jobs to reproduce more expensive analyses
-
-    This image is also published on every commit to [docker hub](https://hub.docker.com/repository/docker/subugoe/hoad), tagged by git sha and reference (branch, release).
-
-    This image also includes the RStudio IDE, so you can also develop *inside* this image. 
-
-    To run this image, navigate your shell to the root of the repository on your machine and run:
-
-    ```
-    docker run --env DISABLE_AUTH=true \
-      --publish 8787:8787 \
-      --volume $(pwd):/home/rstudio/Documents 
-      subugoe/hoad:refactor-as-pkg
-    ```
-
-    This will automatically download the build image from Docker Hub.
-    You can also rebuild it locally by running
-
-    ```
-    docker build --tag hoad .
-    ```
+This outlines how to propose a change to openairegraph. 
+For more detailed info about contributing to this, and other tidyverse packages, please see the
+[**development contributing guide**](https://rstd.io/tidy-contrib). 
 
 ## Fixing typos
 
@@ -71,12 +16,9 @@ If you want to make a bigger change, it's a good idea to first file an issue and
 If you’ve found a bug, please file an issue that illustrates the bug with a minimal 
 [reprex](https://www.tidyverse.org/help/#reprex) (this will also help you write a unit test, if needed).
 
-
 ### Pull request process
 
-This requires kno
-
-*   Fork the package and clone onto your computer. If you haven't done this before, we recommend using `usethis::create_from_github("subugoe/hoad", fork = TRUE)`.
+*   Fork the package and clone onto your computer. If you haven't done this before, we recommend using `usethis::create_from_github("subugoe/openairegraph", fork = TRUE)`.
 
 *   Install all development dependences with `devtools::install_dev_deps()`, and then make sure the package passes R CMD check by running `devtools::check()`. 
     If R CMD check doesn't pass cleanly, it's a good idea to ask for help before continuing. 
@@ -93,14 +35,13 @@ This requires kno
 *   New code should follow the tidyverse [style guide](https://style.tidyverse.org). 
     You can use the [styler](https://CRAN.R-project.org/package=styler) package to apply these styles, but please don't restyle code that has nothing to do with your PR.  
 
-*  We use [roxygen2](https://cran.r-project.org/package=roxygen2), with [Markdown syntax](https://cran.r-project.org/web/packages/roxygen2/vignettes/markdown.html), for documentation.  
+*  We use [roxygen2](https://cran.r-project.org/package=roxygen2), with [Markdown syntax](https://cran.r-project.org/web/packages/roxygen2/vignettes/rd-formatting.html), for documentation.  
 
 *  We use [testthat](https://cran.r-project.org/package=testthat) for unit tests. 
    Contributions with test cases included are easier to accept.  
 
-
 ## Code of Conduct
 
-Please note that the hoad project is released with a
+Please note that the openairegraph project is released with a
 [Contributor Code of Conduct](CODE_OF_CONDUCT.md). By contributing to this
 project you agree to abide by its terms.

.github/workflows/main.yaml

@@ -56,17 +56,6 @@ jobs:
       - name: Copy dependencies to working directory
         run: |
           cp --recursive --force /usr/local/lib/R/site-library/* deps/
-      - name: Build and push docker image
-        uses: docker/build-push-action@v1
-        with:
-          username: ${{ secrets.DOCKER_USERNAME }}
-          password: ${{ secrets.DOCKER_TOKEN }}
-          repository: subugoe/openairegraph
-          tag_with_sha: true
-          tag_with_ref: true
-          add_git_labels: true
-          tags: ${{ github.sha }}
-          push: ${{ github.event_name != 'pull_request' }}
       - name: Build pkgdown website
         run: pkgdown::build_site()
         shell: Rscript {0}

DESCRIPTION

@@ -37,7 +37,7 @@ Imports:
     progress (>= 1.2.2),
     base64enc (>= 0.1.3),
     methods (>= 3.6.3)
-RoxygenNote: 7.1.0
+RoxygenNote: 7.1.1
 Suggests: 
     testthat (>= 2.1.0),
     future (>= 1.17.0),