Initial commit for the new Histonets web interface 🔥

.coveragerc

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+[run]
+include = histonets/*
+omit = *migrations*, *tests*
+plugins =
+    django_coverage_plugin

.dockerignore

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+.*
+!.coveragerc
+!.env
+!.pylintrc

.editorconfig

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+# http://editorconfig.org
+
+root = true
+
+[*]
+charset = utf-8
+end_of_line = lf
+insert_final_newline = true
+trim_trailing_whitespace = true
+
+[*.{py,rst,ini}]
+indent_style = space
+indent_size = 4
+
+[*.py]
+line_length=120
+known_first_party=histonets
+multi_line_output=3
+default_section=THIRDPARTY
+
+[*.{html,css,scss,json,yml}]
+indent_style = space
+indent_size = 2
+
+[*.md]
+trim_trailing_whitespace = false
+
+[Makefile]
+indent_style = tab
+
+[nginx.conf]
+indent_style = space
+indent_size = 2

.envs/.local/.celery

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+# Celery
+# ------------------------------------------------------------------------------
+CELERY_BROKER_URL=redis://redis:6379/0
+POSTGRES_USER=EGXfeCxBUhDOoeEPkHlbfOIfcexAXykZ
+

.envs/.local/.django

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+# General
+# ------------------------------------------------------------------------------
+USE_DOCKER=yes

.envs/.local/.postgres

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+# PostgreSQL
+# ------------------------------------------------------------------------------
+POSTGRES_DB=histonets
+POSTGRES_USER=EGXfeCxBUhDOoeEPkHlbfOIfcexAXykZ
+POSTGRES_PASSWORD=9Xll5fyBrjgIRMjWyrA9ohAggMu4EDl7GlKB3EfVm5MeEoSh11Hq2pKVXbJ3a4CA

.gitattributes

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+* text=auto

.gitignore

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+### Python template
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+staticfiles/
+assets/
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# Environments
+.venv
+venv/
+ENV/
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+
+### Node template
+# Logs
+logs
+*.log
+npm-debug.log*
+yarn-debug.log*
+yarn-error.log*
+
+# Runtime data
+pids
+*.pid
+*.seed
+*.pid.lock
+
+# Directory for instrumented libs generated by jscoverage/JSCover
+lib-cov
+
+# Coverage directory used by tools like istanbul
+coverage
+
+# nyc test coverage
+.nyc_output
+
+# Grunt intermediate storage (http://gruntjs.com/creating-plugins#storing-task-files)
+.grunt
+
+# Bower dependency directory (https://bower.io/)
+bower_components
+
+# node-waf configuration
+.lock-wscript
+
+# Compiled binary addons (http://nodejs.org/api/addons.html)
+build/Release
+
+# Dependency directories
+node_modules/
+jspm_packages/
+
+# Typescript v1 declaration files
+typings/
+
+# Optional npm cache directory
+.npm
+
+# Optional eslint cache
+.eslintcache
+
+# Optional REPL history
+.node_repl_history
+
+# Output of 'npm pack'
+*.tgz
+
+# Yarn Integrity file
+.yarn-integrity
+
+
+### Linux template
+*~
+
+# temporary files which can be created if a process still has a handle open of a deleted file
+.fuse_hidden*
+
+# KDE directory preferences
+.directory
+
+# Linux trash folder which might appear on any partition or disk
+.Trash-*
+
+# .nfs files are created when an open file is removed but is still being accessed
+.nfs*
+
+
+### VisualStudioCode template
+.vscode/*
+!.vscode/settings.json
+!.vscode/tasks.json
+!.vscode/launch.json
+!.vscode/extensions.json
+
+
+
+
+
+### Windows template
+# Windows thumbnail cache files
+Thumbs.db
+ehthumbs.db
+ehthumbs_vista.db
+
+# Dump file
+*.stackdump
+
+# Folder config file
+Desktop.ini
+
+# Recycle Bin used on file shares
+$RECYCLE.BIN/
+
+# Windows Installer files
+*.cab
+*.msi
+*.msm
+*.msp
+
+# Windows shortcuts
+*.lnk
+
+
+### macOS template
+# General
+*.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+
+### SublimeText template
+# Cache files for Sublime Text
+*.tmlanguage.cache
+*.tmPreferences.cache
+*.stTheme.cache
+
+# Workspace files are user-specific
+*.sublime-workspace
+
+# Project files should be checked into the repository, unless a significant
+# proportion of contributors will probably not be using Sublime Text
+# *.sublime-project
+
+# SFTP configuration file
+sftp-config.json
+
+# Package control specific files
+Package Control.last-run
+Package Control.ca-list
+Package Control.ca-bundle
+Package Control.system-ca-bundle
+Package Control.cache/
+Package Control.ca-certs/
+Package Control.merged-ca-bundle
+Package Control.user-ca-bundle
+oscrypto-ca-bundle.crt
+bh_unicode_properties.cache
+
+# Sublime-github package stores a github token in this file
+# https://packagecontrol.io/packages/sublime-github
+GitHub.sublime-settings
+
+
+### Vim template
+# Swap
+[._]*.s[a-v][a-z]
+[._]*.sw[a-p]
+[._]s[a-v][a-z]
+[._]sw[a-p]
+
+# Session
+Session.vim
+
+# Temporary
+.netrwhist
+
+# Auto-generated tag files
+tags
+
+
+### VirtualEnv template
+# Virtualenv
+# http://iamzed.com/2009/05/07/a-primer-on-virtualenv/
+[Bb]in
+[Ii]nclude
+[Ll]ib
+[Ll]ib64
+[Ll]ocal
+[Ss]cripts
+pyvenv.cfg
+pip-selfcheck.json
+
+
+
+
+histonets/media/
+compose/production/cantaloupe/cantaloupe.properties
+
+# Added to maintain local compose files which are ignored by something above.
+# See issue https://github.com/pydanny/cookiecutter-django/issues/1321
+!/compose/local/
+
+.env
+.envs/*
+!.envs/.local/

.pylintrc

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+[MASTER]
+load-plugins=pylint_common, pylint_django, pylint_celery 
+
+[FORMAT]
+max-line-length=120
+
+[MESSAGES CONTROL]
+disable=missing-docstring,invalid-name
+
+[DESIGN]
+max-parents=13
+
+[TYPECHECK]
+generated-members=REQUEST,acl_users,aq_parent,"[a-zA-Z]+_set{1,2}",save,delete

.travis.yml

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+sudo: true
+before_install:
+  - sudo apt-get update -qq
+  - sudo apt-get install -qq build-essential gettext python-dev zlib1g-dev libpq-dev xvfb
+  - sudo apt-get install -qq libtiff4-dev libjpeg8-dev libfreetype6-dev liblcms1-dev libwebp-dev
+  - sudo apt-get install -qq graphviz-dev python-setuptools python3-dev python-virtualenv python-pip
+  - sudo apt-get install -qq firefox automake libtool libreadline6 libreadline6-dev libreadline-dev
+  - sudo apt-get install -qq libsqlite3-dev libxml2 libxml2-dev libssl-dev libbz2-dev wget curl llvm
+language: python
+python:
+  - "3.6"

CONTRIBUTORS.txt

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+Center for Interdisciplinary Digital Research (CIDR)