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that's a limitation of github, not something we have control over. We put a lot of effort into the docs so that they keep up to date with code changes as automatically as possible, which is why we generate these scripts at build time.
Some codework is not being showed up in the maps.rst section - https://github.com/sunpy/sunpy/blob/master/doc/source/guide/data_types/maps.rst#plotting-keywords
which is present in the current documents http://docs.sunpy.org/en/latest/guide/data_types/maps.html#plotting-keywords.
Also I think it would be better if we could upload the generated plots and the images in the .rst files.
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