Biocaml - The OCaml Bioinformatics Library
Biocaml aims to be a high-performance user-friendly library for Bioinformatics. Current features include:
-
Support for several standard data formats
- SGR
- WIG
- FASTA
- BED
- GFF (version 2 and 3)
- UCSC track files
- ELAND
- BPMAP
- CEL
Support includes not just parsing and printing, but also various operations dependent on the specific data type represented.
-
Classification of items into bins and histograms with polymorphic bin types.
-
Basic math and statistics routines
-
Coming soon:
- Peak finding algorithms
- Efficient querying of annotations
- Efficient computations for sets of integer intervals
- ... and more!
Please see INSTALL file.
The Biocaml library is distributed according to the LGPL + linking exception terms as defined in the LICENSE file, which you should have received a copy of along with this library.
Ashish Agarwal: agarwal1975@gmail.com
Website: http://biocaml.org