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diabetes.py
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diabetes.py
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# Load Libraries
import pandas
import matplotlib.pyplot as plt
from pandas import read_csv
from sklearn.model_selection import train_test_split
from sklearn.model_selection import cross_val_score
from sklearn.model_selection import StratifiedKFold
from sklearn.metrics import classification_report
from sklearn.metrics import confusion_matrix
from sklearn.metrics import accuracy_score
from sklearn.linear_model import LogisticRegression
from sklearn.tree import DecisionTreeClassifier
from sklearn.neighbors import KNeighborsClassifier
from sklearn.discriminant_analysis import LinearDiscriminantAnalysis
from sklearn.naive_bayes import GaussianNB
from sklearn.svm import SVC
# Load dataset
url = "https://raw.githubusercontent.com/jbrownlee/Datasets/master/pima-indians-diabetes.data.csv"
names = ['preg', 'plas', 'pres', 'skin', 'test', 'mass', 'pedi', 'age', 'class']
dataset = read_csv(url, names=names)
array = dataset.values
X = array[:,0:8]
y = array[:,8]
# Split-out validation dataset
X_train, X_validation, Y_train, Y_validation = train_test_split(X, y, test_size=0.20, random_state=1)
# Spot Check Algorithms
models = []
models.append(('LR', LogisticRegression()))
models.append(('LDA', LinearDiscriminantAnalysis()))
models.append(('KNN', KNeighborsClassifier()))
models.append(('CART', DecisionTreeClassifier()))
models.append(('NB', GaussianNB()))
models.append(('SVM', SVC()))
# evaluate each model in turn
results = []
names = []
for name, model in models:
kfold = StratifiedKFold(n_splits=10, random_state=7)
cv_results = cross_val_score(model, X_train, Y_train, cv=kfold, scoring='accuracy')
results.append(cv_results)
names.append(name)
print('%s: %f (%f)' % (name, cv_results.mean(), cv_results.std()))
# boxplot algorithm comparison
fig = plt.figure()
fig.suptitle('Algorithm Comparison')
ax = fig.add_subplot(111)
plt.boxplot(results)
ax.set_xticklabels(names)
plt.show()
# Make predictions on validation dataset
model = LinearDiscriminantAnalysis()
model.fit(X_train, Y_train)
predictions = model.predict(X_validation)
# Evaluate predictions
print(accuracy_score(Y_validation, predictions))
print(confusion_matrix(Y_validation, predictions))
print(classification_report(Y_validation, predictions))