mediqa-chat

For Subtask A - Dialogue2Topic Classification, execute the following steps -

cd TaskA
./install.sh
./activate.sh
./decode_taskA_run1.sh <filepath>

For Subtask B - Dialogue2Note Summarization, execute the following steps -

cd TaskB
./install.sh
./activate.sh
./decode_taskB_run1.sh <filepath>
./decode_taskB_run2.sh <filepath>
./decode_taskB_run3.sh <filepath>

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
2023_ImageCLEFmed_Mediqa @ 4f76466		2023_ImageCLEFmed_Mediqa @ 4f76466
TaskA		TaskA
TaskB		TaskB
.dockerignore		.dockerignore
.gitignore		.gitignore
.gitmodules		.gitmodules
Dockerfile		Dockerfile
LICENSE		LICENSE
README.md		README.md
Task A - Inference.py		Task A - Inference.py
Task A - Section Header Multi Class Classification - LoRA.py		Task A - Section Header Multi Class Classification - LoRA.py
Task A - Summarization - LoRA.py		Task A - Summarization - LoRA.py
Task A and B - EDA.ipynb		Task A and B - EDA.ipynb
TaskA - Decoding - EDA.py		TaskA - Decoding - EDA.py
TaskA - Metric Optimization - Beam Search - LoRA.py		TaskA - Metric Optimization - Beam Search - LoRA.py
TaskA-augmented_data.csv		TaskA-augmented_data.csv
TaskA_and_B-idx2label.json		TaskA_and_B-idx2label.json
TaskA_and_B-label2idx.json		TaskA_and_B-label2idx.json
TaskA_inference_submission.py		TaskA_inference_submission.py
TaskB_OOF_Scores.csv		TaskB_OOF_Scores.csv
TaskB_Summarization_BioBart_Inference.py		TaskB_Summarization_BioBart_Inference.py
TaskB_Summarization_FLAN_T5_XXL_Inference.py		TaskB_Summarization_FLAN_T5_XXL_Inference.py
TaskB_Summarization_Inference.py		TaskB_Summarization_Inference.py
config.py		config.py
ds_config_zero0.json		ds_config_zero0.json
ds_config_zero2.json		ds_config_zero2.json
ds_config_zero3.json		ds_config_zero3.json
losses.py		losses.py
requirements.txt		requirements.txt
taskA_SuryaKiran_run1_mediqaSum.csv		taskA_SuryaKiran_run1_mediqaSum.csv
taskA_and_B_train_valid_test_split.json		taskA_and_B_train_valid_test_split.json
taskB_SuryaKiran_run1_mediqaSum.csv		taskB_SuryaKiran_run1_mediqaSum.csv
taskB_SuryaKiran_run2_mediqaSum.csv		taskB_SuryaKiran_run2_mediqaSum.csv
taskB_SuryaKiran_run3_mediqaSum.csv		taskB_SuryaKiran_run3_mediqaSum.csv
taskC_train_valid_test.json		taskC_train_valid_test.json
transformer_classifier.py		transformer_classifier.py

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suri-kunal/clef-mediqa-sum-2023

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