Merge pull request #51 from sys-bio/issue-48

Issue 48

.gitignore

@@ -42,5 +42,7 @@ third_party/curl-7.69.1/docs
 ExtraSearchDirectories.txt
 PipWheels
 
+biomodels
+
 
 

CMakeLists.txt

@@ -8,7 +8,7 @@ cmake_minimum_required(VERSION 3.15)
 # Set version.
 set(VERSION_MAJOR 1)
 set(VERSION_MINOR 2)
-set(VERSION_MICRO 5)
+set(VERSION_MICRO 6)
 
 set(LIBOMEXMETA_VERSION ${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_MICRO})
 configure_file(VERSION.txt.in VERSION.txt)

docker/ManyLinux2014/Dockerfile

@@ -0,0 +1,19 @@
+
+FROM quay.io/pypa/manylinux2014_x86_64
+
+RUN git clone https://github.com/microsoft/vcpkg.git
+RUN cd vcpkg \
+    && ./bootstrap-vcpkg.sh
+RUN cd vcpkg ./vcpkg integrate install
+RUN cd vcpkg && ./vcpkg install curl pcre openssl yajl sqlite3 liblzma
+
+RUN yum install -y wget
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.9.2-Linux-x86_64.sh
+RUN bash Miniconda3-py39_4.9.2-Linux-x86_64.sh -b -p /Miniconda3
+
+RUN /Miniconda3/bin/conda create -y --name py37 python=3.7 pytest
+RUN /Miniconda3/bin/conda create -y --name py38 python=3.8 pytest
+RUN /Miniconda3/bin/conda create -y --name py39 python=3.9 pytest
+
+
+

docker/libOmexMeta-ManyLinux/Dockerfile

@@ -0,0 +1,36 @@
+FROM ciaranwelsh/manylinux2014
+
+RUN git clone https://github.com/sys-bio/libOmexMeta.git --recurse-submodules
+RUN cd /libOmexMeta && mkdir build && cd build \
+    && cmake -DCMAKE_INSTALL_PREFIX=../install-docker -DCMAKE_BUILD_TYPE=Release -DVCPKG_ROOT=/vcpkg -DBUILD_TESTS=ON .. \
+    && cmake --build . --target install -j 12 --config Release
+
+
+RUN cd /libOmexMeta && mkdir build-py37 && cd build-py37 \
+    && cmake -DCMAKE_INSTALL_PREFIX=../install-docker-py37 -DCMAKE_BUILD_TYPE=Release -DVCPKG_ROOT=/vcpkg -DBUILD_TESTS=ON -DBUILD_PYTHON=ON -DPython_ROOT_DIR=/Miniconda3/envs/py37 ..
+RUN cd /libOmexMeta/build-py37 \
+    && cmake --build . --target install -j 12 --config Release
+RUN ctest --verbose --extra-verbose
+
+RUN cd /libOmexMeta/install-docker-py37 \
+    && /Miniconda3/envs/py37/bin/python ./setup.py bdist_wheel
+
+
+RUN cd /libOmexMeta && mkdir build-py38 && cd build-py38 \
+    && cmake -DCMAKE_INSTALL_PREFIX=../install-docker-py38 -DCMAKE_BUILD_TYPE=Release -DVCPKG_ROOT=/vcpkg -DBUILD_TESTS=ON -DBUILD_PYTHON=ON -DPython_ROOT_DIR=/Miniconda3/envs/py38 ..
+RUN cd /libOmexMeta/build-py38 \
+    && cmake --build . --target install -j 12 --config Release
+RUN ctest --verbose --extra-verbose
+
+RUN cd /libOmexMeta/install-docker-py38 \
+    && /Miniconda3/envs/py38/bin/python ./setup.py bdist_wheel
+
+
+RUN cd /libOmexMeta && mkdir build-py39 && cd build-py39 \
+    && cmake -DCMAKE_INSTALL_PREFIX=../install-docker-py39 -DCMAKE_BUILD_TYPE=Release -DVCPKG_ROOT=/vcpkg -DBUILD_TESTS=ON -DBUILD_PYTHON=ON -DPython_ROOT_DIR=/Miniconda3/envs/py39 ..
+RUN cd /libOmexMeta/build-py39 \
+    && cmake --build . --target install -j 12 --config Release
+RUN ctest --verbose --extra-verbose
+
+RUN cd /libOmexMeta/install-docker-py39 \
+    && /Miniconda3/envs/py39/bin/python ./setup.py bdist_wheel