accessing_model.rst

Accessing the SBML Model Variables

RoadRunner

The following methods allow users to obtain information on the model

Compartments

• :cpprr::ExecutableModel::getCompartmentVolumes
• :cpprr::ExecutableModel::getNumCompartments
• :cpprr::ExecutableModel::getCompartmentIds
• :cpprr::ExecutableModel::setCompartmentVolumes

Boundary Species

• :cpprr::ExecutableModel::getBoundarySpeciesConcentrations
• :cpprr::ExecutableModel::setBoundarySpeciesConcentrations
• :cpprr::ExecutableModel::getNumBoundarySpecies
• :cpprr::ExecutableModel::getBoundarySpeciesIds

Floating Species

• :cpprr::ExecutableModel::getFloatingSpeciesConcentrations
• :cpprr::ExecutableModel::setFloatingSpeciesConcentrations
• :cpprr::ExecutableModel::getNumFloatingSpecies
• :cpprr::ExecutableModel::getFloatingSpeciesIds

Initial Conditions

• :cpprr::ExecutableModel::getFloatingSpeciesInitAmountIds
• :cpprr::ExecutableModel::getFloatingSpeciesInitConcentrationIds
• :cpprr::ExecutableModel::getFloatingSpeciesInitAmounts
• :cpprr::ExecutableModel::setFloatingSpeciesInitAmounts
• :cpprr::ExecutableModel::getFloatingSpeciesInitConcentrations
• :cpprr::ExecutableModel::setFloatingSpeciesInitConcentrations

Reactions

• :cpprr::ExecutableModel::getNumReactions
• :cpprr::ExecutableModel::getReactionRates
• :cpprr::ExecutableModel::getReactionIds

Reaction Rates

• :cpprr::ExecutableModel::getFloatingSpeciesAmountRates
• :cpprr::ExecutableModel::getReactionRates
• :cpprr::ExecutableModel::getNumReactions
• :cpprr::ExecutableModel::getReactionIds

Global Parameters

• :cpprr::ExecutableModel::setGlobalParameterValues
• :cpprr::ExecutableModel::getGlobalParameterValues
• :cpprr::ExecutableModel::getNumGlobalParameters
• :cpprr::ExecutableModel::getNumGlobalParameters