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I ran selscan xpehh and normalized the output by windows of 10Kb using the default value of qbins. We have several windows in the top 1% and I was wondering if it's possible to obtain windows in the top 0.5 and 0.1% as well, so that we have less candidate regions to examine.
Thank you!
Juanita
The text was updated successfully, but these errors were encountered:
Hi Juanita,
This is a feature I should add to norm, but right now it only reports 1%
and 5%. In principle, you can calculate this yourself, by pooling windows
using the #nsnp bins and calculating the quantile for each bin. Although I
realize this is a bit of a pain. Sorry for the hassle.
Zachary
Le mar. 4 juin 2024 à 09:41, JuanitaGil ***@***.***> a écrit :
Hi Zach,
I ran selscan xpehh and normalized the output by windows of 10Kb using the
default value of qbins. We have several windows in the top 1% and I was
wondering if it's possible to obtain windows in the top 0.5 and 0.1% as
well, so that we have less candidate regions to examine.
Thank you!
Juanita
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Hi Zach,
I ran selscan xpehh and normalized the output by windows of 10Kb using the default value of qbins. We have several windows in the top 1% and I was wondering if it's possible to obtain windows in the top 0.5 and 0.1% as well, so that we have less candidate regions to examine.
Thank you!
Juanita
The text was updated successfully, but these errors were encountered: