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MARS-SEQ pipeline (scrna module from tlsrc)

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annotations		annotations
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utils/wells_cells_thingy		utils/wells_cells_thingy
README.md		README.md

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MARS-SEQ

MARS-SEQ analysis pipeline (scrna module from tlsrc): https://doi.org/10.1038/s41596-019-0164-4

Usage:

Full execution (fastq -> UMI-matrix): run_pipeline.sh scdb_path
Only mapping: run_mapping.sh scdb_path NJOBS
Only demultiplexing (of UMIS): run_demultiplexing.sh scdb_path NJOBS

Go here for additional details.

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MARS-SEQ pipeline (scrna module from tlsrc)

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