[allhic] Move all nim code into nim folder

tanghaibao · Dec 28, 2017 · 0e1a535 · 0e1a535
1 parent ce13e7d
commit 0e1a535
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diff --git a/allhic.go b/allhic.go
@@ -0,0 +1,21 @@
+package main
+
+import (
+	"fmt"
+	"github.com/docopt/docopt-go"
+)
+
+func main() {
+	usage := `ALLHIC: genome scaffolding based on Hi-C data
+
+Usage:
+  allhic partition
+  allhic optimize
+
+Options:
+  -h --help       Show this screen.
+  --version       Show version.`
+
+	arguments, _ := docopt.Parse(usage, nil, true, "ALLHIC 0.7.11", false)
+	fmt.Println(arguments)
+}
diff --git a/allhic.nim → nim/allhic.nim b/allhic.nim → nim/allhic.nim
diff --git a/allhic.nimble → nim/allhic.nimble b/allhic.nimble → nim/allhic.nimble
diff --git a/hic/base.nim → nim/hic/base.nim b/hic/base.nim → nim/hic/base.nim
diff --git a/hic/clm.nim → nim/hic/clm.nim b/hic/clm.nim → nim/hic/clm.nim
diff --git a/hic/matrix.nim → nim/hic/matrix.nim b/hic/matrix.nim → nim/hic/matrix.nim
diff --git a/hic/partition.nim → nim/hic/partition.nim b/hic/partition.nim → nim/hic/partition.nim
diff --git a/install.sh → nim/install.sh b/install.sh → nim/install.sh
diff --git a/requirements.txt → nim/requirements.txt b/requirements.txt → nim/requirements.txt