[tests] Reformat build.yml

.github/workflows/build.yml

@@ -1,38 +1,36 @@
 name: build
 on: [push]
 jobs:
-
   build:
     name: Build
     runs-on: ubuntu-latest
     strategy:
       matrix:
         go: [1.11, 1.12]
-    
+
     steps:
+      - name: Set up Go ${{ matrix.go }}
+        uses: actions/setup-go@v1
+        with:
+          go-version: ${{ matrix.go }}
+        id: go
+
+      - name: Check out code into the Go module directory
+        uses: actions/checkout@v1
 
-    - name: Set up Go ${{ matrix.go }}
-      uses: actions/setup-go@v1
-      with:
-        go-version: ${{ matrix.go }}
-      id: go
+      - name: Get dependencies
+        run: |
+          go get -v -t -d ./...
+          if [ -f Gopkg.toml ]; then
+              curl https://raw.githubusercontent.com/golang/dep/master/install.sh | sh
+              dep ensure
+          fi
 
-    - name: Check out code into the Go module directory
-      uses: actions/checkout@v1
+      - name: Build
+        run: go build -o allhic -v cmd/allhic.go
 
-    - name: Get dependencies
-      run: |
-        go get -v -t -d ./...
-        if [ -f Gopkg.toml ]; then
-            curl https://raw.githubusercontent.com/golang/dep/master/install.sh | sh
-            dep ensure
-        fi
+      - name: Unit testing
+        run: go test -v
 
-    - name: Build
-      run: go build -v .
-
-    - name: Unit testing
-      run: go test -v
-
-    - name: Functional testing
-      run: bash functional-tests.sh
+      - name: Functional testing
+        run: bash functional-tests.sh

README.md

@@ -7,7 +7,8 @@
     _/ /   \ \_  _| |__/ | _| |__/ | _| |  | |_  _| |_\ `.___.'\
     |____| |____||________||________||____||____||_____|`.____ .'
 
-[![Travis-CI](https://travis-ci.org/tanghaibao/allhic.svg?branch=master)](https://travis-ci.org/tanghaibao/allhic)
+[![Github
+Actions](https://github.com/tanghaibao/allhic/workflows/build/badge.svg)](https://github.com/tanghaibao/allhic/actions)
 
 |         |                                                               |
 | ------- | ------------------------------------------------------------- |
@@ -18,7 +19,11 @@
 
 ## Introduction
 
-This program can be used to scaffold genomic contigs based on Hi-C data, which is particularly effectively for auto-polyploid genomes. **We currently recommend using this program in a scripted pipeline, as detailed [here](https://github.com/tangerzhang/ALLHiC/wiki).**
+**We currently recommend only using this program in a scripted pipeline, as detailed
+[here](https://github.com/tangerzhang/ALLHiC/wiki).**
+
+ALLHiC can be used to scaffold genomic contigs based on Hi-C data, which is
+particularly effectively for auto-polyploid or heterozygous diploid genomes.
 
 ## Installation
 

agp.go

@@ -128,7 +128,8 @@ func buildFasta(agpfile string, seqs map[string]*seq.Seq) {
 
 // writeRecord writes the FASTA record to the file
 func writeRecord(object string, buf bytes.Buffer, outfh *xopen.Writer) {
-	record, _ := fastx.NewRecordWithoutValidation(seq.DNA, []byte{}, []byte(object), []byte{}, buf.Bytes())
+	record, _ := fastx.NewRecordWithoutValidation(seq.DNA, []byte{}, []byte(object),
+		[]byte{}, buf.Bytes())
 	size := record.Seq.Length()
 	if size > LargeSequence {
 		log.Noticef("Write sequence %s (size = %d bp)", record.Name, size)