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dvklopfenstein committed Jul 28, 2018
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8 changes: 4 additions & 4 deletions doc/md/README_NCBI_gene.md
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Expand Up @@ -6,7 +6,7 @@ Example of printing gene symbols (instead of geneids) from NCBI gene in a GOEA r
3. Create a geneid2symbol.txt ASCII file
4. Run GOEA using --id2name flag

## Download NCBI gene information into gene_result.txt
## 1) Download NCBI gene information into gene_result.txt
* Go to NCBI Gene in your browser https://www.ncbi.nlm.nih.gov/gene/
* Type a search pattern and hit the "Search" button.
For example, to download all human protein-coding genes:
Expand All @@ -22,9 +22,9 @@ genetype protein coding[Properties] AND "9606"[Taxonomy ID] AND alive[property]

![NCBI Gene Search](/doc/images/NCBI_gene_search.png)

## Convert gene_result.txt file into Python
## Create a geneid2symbol.txt ASCII file
## Run GOEA using --id2name flag
## 2) Convert gene_result.txt file into Python
## 3) Create a geneid2symbol.txt ASCII file
## 4) Run GOEA using --id2name flag


Copyright (C) 2016-2018, DV Klopfenstein, Haibao Tang et al. All rights reserved.

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