Added example of plotting two GO terms

tanghaibao · Jun 16, 2018 · 449939f · 449939f
1 parent e913106
commit 449939f
Show file tree

Hide file tree

Showing 3 changed files with 25 additions and 2 deletions.
diff --git a/doc/images/plot_go/heart_jogging.png b/doc/images/plot_go/heart_jogging.png
diff --git a/doc/images/plot_go/heart_jogging_r1.png b/doc/images/plot_go/heart_jogging_r1.png
diff --git a/doc/md/README_plot_go.md b/doc/md/README_plot_go.md
@@ -1,7 +1,11 @@
 # Plot the GO hierarchy with go_plot.py
 
-  * [Plot one GO term and its ancestors]()
-  * [Plot one GO term and its ancestors (with relationships)]()
+  * Plot one GO term and its ancestors:
+    * [Using 'is_a' relationship only (default)](#plot-one-go-term-and-its-ancestors)
+    * [Using all relationships](#plot-one-go-term-and-its-ancestors-with-relationships)
+  * Plot two GO terms and their ancestors:
+    * [Using 'is_a' relationship only (default)](#plot-two-go-terms-and-their-ancestors)
+    * [Using all relationships](#plot-two-go-terms-and-their-ancestors-with-relationships)
 
 ## Plot one GO term and its ancestors
 Plot one term and all ancestors using the 'is_a' attribute.    
@@ -19,4 +23,23 @@ scripts/go_plot.py GO:0003304 --r
 ```
 ![heart_jogging_r1](../images/plot_go/GO_0003304_myocardial_epithelial_involution_involved_in_heart_jogging_r1.png)
 
+
+## Plot two GO terms and their ancestors
+Plot two terms and all ancestors using the 'is_a' attribute.        
+```
+scripts/go_plot.py GO:0003304 GO:0003146 -o heart_jogging.png
+```
+
+![heart_jogging_r0](../images/plot_go/heart_jogging.png)
+
+
+## Plot two GO terms and their ancestors (with relationships)
+Plot two terms and all ancestors using the 'is_a' attribute and all relationships (--r).
+
+```
+scripts/go_plot.py GO:0003304 GO:0003146 --r -o heart_jogging_r1.png
+```
+![heart_jogging_r1](../images/plot_go/heart_jogging_r1.png
+
+
 Copyright (C) 2010-2018, DV Klopfenstein, Haibao Tang et al. All rights reserved.