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describe 'part_of' arrow
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dvklopfenstein committed Jun 16, 2018
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9 changes: 6 additions & 3 deletions doc/md/README_plot_go.md
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Expand Up @@ -19,7 +19,8 @@ scripts/go_plot.py GO:0003304


## Plot one GO term and its ancestors (with relationships)
Plot one term and all ancestors using the 'is_a' attribute and all relationships (--r).
Plot one term and all ancestors using the 'is_a' attribute and all relationships (--r).
The 'part_of' relationships are represented by dashed magenta arrows.

```
scripts/go_plot.py GO:0003304 --r
Expand All @@ -37,7 +38,8 @@ scripts/go_plot.py GO:0003304 GO:0003146 -o heart_jogging.png


## Plot two GO terms and their ancestors (with relationships)
Plot two terms and all ancestors using the 'is_a' attribute and all relationships (--r).
Plot two terms and all ancestors using the 'is_a' attribute and all relationships (--r).
The 'part_of' relationships are represented by dashed magenta arrows.

```
scripts/go_plot.py GO:0003304 GO:0003146 --r -o heart_jogging_r1.png
Expand All @@ -56,7 +58,8 @@ scripts/go_plot.py GO:0003304 GO:0003146#d6fffa -o heart_jogging_ice.png


## Plot two GO terms using different colors and their ancestors (with relationships)
Plot two terms ('heart jogging' (GO:0003146) colored in [ice](http://klaash.github.io/xkcdcolorpicker/#ice)) and all ancestors using the 'is_a' attribute and all relationships (--r).
Plot two terms ('heart jogging' (GO:0003146) colored in [ice](http://klaash.github.io/xkcdcolorpicker/#ice)) and all ancestors using the 'is_a' attribute and all relationships (--r).
The 'part_of' relationships are represented by dashed magenta arrows.

```
scripts/go_plot.py GO:0003304 GO:0003146#d6fffa --r -o heart_jogging_ice_r1.png
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