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[readme] add statsmodels as optional dependency; version up
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tanghaibao committed Mar 18, 2016
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8 changes: 6 additions & 2 deletions README.rst
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Expand Up @@ -69,11 +69,15 @@ terms (e.g. generic GOslim) ::

Dependencies
-------------
- `fisher <http://pypi.python.org/pypi/fisher/>`_ module for calculating
- `fisher <http://pypi.python.org/pypi/fisher/>`_ (required) for calculating
Fisher's exact test::

easy_install fisher

- `statsmodels` (optional) for access to a variety of statistical tests for GOEA::

easy_install statsmodels

- To plot the ontology lineage, install one of these two options:

1. Graphviz
Expand Down Expand Up @@ -187,7 +191,7 @@ We have implemented several significance tests:
* ``holm``, hold correction
* ``fdr``, false discvery rate (fdr) implementation using resampling

Additional methods are available if `statsmodels` is installed:
Additional methods are available if ``statsmodels`` is installed:

* ``sm_bonferroni``, bonferroni one-step correction
* ``sm_sidak``, sidak one-step correction
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2 changes: 1 addition & 1 deletion goatools/version.py
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@@ -1 +1 @@
__version__ = "0.6.3"
__version__ = "0.6.4"

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