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Better support for obsolete terms (#276, thanks @Maxim-Karpov) #277

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merged 11 commits into from
Sep 27, 2023

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tanghaibao
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This PR adds option --obsolete to find_enrichment.py.

  --obsolete {keep,replace,skip}
                        Strategy for handling obsolete GO terms (default: skip)

The replace strategy updates the obsolete GO term with terms suggested in replaced_by and consider.

@tanghaibao tanghaibao merged commit eff7681 into main Sep 27, 2023
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@tanghaibao tanghaibao deleted the issues/276 branch September 27, 2023 14:19
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